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Examination of Thymic Positive and Negative Selection by Flow Cytometry
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OMIP-116: A 39-Color Full Spectrum Flow Cytometric Panel to Deeply Characterize Human Thymopoiesis.

Simone Balin1,2, Paolo Marzano1,2, Daniele Manganaro3

  • 1Unit of Clinical and Experimental Immunology, Department of Medical Biotechnologies and Translational Medicine, University of Milan, Segrate, Milan, Italy.

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|July 22, 2025
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Summary
This summary is machine-generated.

We developed a 39-color flow cytometry panel to analyze T cell development in the thymus. This advanced tool aids in understanding immune disorders and profiling peripheral T cells, including unconventional subsets.

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Area of Science:

  • Immunology
  • Cell Biology
  • Biotechnology

Background:

  • T cell development in the thymus is crucial for adaptive immunity.
  • Understanding thymopoiesis is key to diagnosing and treating immune dysregulation.
  • Current methods may lack the resolution to fully characterize T cell maturation stages.

Purpose of the Study:

  • To develop and validate a high-dimensional flow cytometry panel for deep characterization of human T cell development.
  • To enable detailed analysis of intrathymic T cell maturation and identify deviations from normal thymopoiesis.
  • To provide a versatile tool for studying immune deficiencies, thymic lesions, and immunosenescence.

Main Methods:

  • Design and optimization of a 39-color (43-parameter) full spectrum flow cytometry panel.
  • Utilizing best practices for multiparametric flow cytometry.
  • Validation using appropriate negative and positive controls.

Main Results:

  • The developed panel allows high-resolution characterization of intrathymic T cell development.
  • It enables the definition of T cell maturation stages and identification of aberrant thymopoiesis.
  • The panel is also applicable for comprehensive profiling of peripheral T cells, including unconventional subsets.

Conclusions:

  • This 39-color flow cytometry panel is a valuable tool for studying T cell development and immune dysregulation.
  • It offers unprecedented resolution for analyzing thymopoiesis and peripheral T cell populations.
  • The panel facilitates research into conditions like immune deficiencies, thymic lesions, immunosenescence, and the role of unconventional T cells.