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Bioinformatic analysis and retrospective clinical study identifying DNAJB4 as a pan-cancer biomarker with a highlight
Chuanmin Chu1,2, Bingnan Lu3, Wenjia Fu3
1Department of Urology, Zhongda Hospital Affiliated to Southeast University, Nanjing, 210000, China.
Abstract:
DNAJB4 plays a crucial role in tumor suppression and proteostasis across various cancers. However, a comprehensive pan-cancer analysis of DNAJB4 remains lacking. We performed an extensive pan-cancer analysis to assess DNAJB4 expression and its clinical value. Analyses included competing endogenous RNA, protein-protein interaction networks, tumor purity, genomic profiling, immune microenvironment evaluation, and drug sensitivity. Gene set enrichment analysis was used to identify key pathways associated with DNAJB4. Additionally, DNAJB4 expression was evaluated in a cohort of 370 kidney neoplasm patients using immunohistochemistry to explore its clinical significance. DNAJB4 expression was significantly lower in tumor tissues compared to normal tissues in pan-cancer analysis. Reduced expression of DNAJB4 correlated with clinical outcomes, tumor purity, genomic alterations, immune microenvironment features, and drug sensitivity. In kidney neoplasm patients, DNAJB4 expression was significantly lower in tumor tissues (P value < 0.001) and was associated with poor prognosis, including progression-free survival (P value < 0.01) and overall survival (P value < 0.05). Higher DNAJB4 levels were linked to advanced tumor stages (P value < 0.001 for T2b-T4, P value < 0.01 for stages 3-4). DNAJB4 serves as a multifunctional biomarker in pan-cancer, particularly in kidney neoplasm, and is closely related to tumorigenesis, staging, and prognosis. Targeting DNAJB4 could provide new therapeutic avenues for cancer treatment.
Insights
DNAJB4 is a tumor suppressor with lower expression in many cancers. Reduced DNAJB4 correlates with poor prognosis and advanced stages, offering potential therapeutic targets in kidney neoplasms and other cancers.
Area of Science:
- Oncology
- Molecular Biology
- Genomics
Background:
- DNAJB4 is implicated in tumor suppression and proteostasis.
- A comprehensive pan-cancer analysis of DNAJB4's role is needed.
Purpose of the Study:
- To conduct a pan-cancer analysis of DNAJB4 expression and clinical significance.
- To investigate DNAJB4's association with genomic alterations, immune microenvironment, and drug sensitivity.
- To evaluate DNAJB4's prognostic value in kidney neoplasms.
Main Methods:
- Pan-cancer analysis of DNAJB4 expression, competing endogenous RNA, protein-protein interactions, tumor purity, genomic profiling, and immune microenvironment.
- Gene set enrichment analysis to identify associated pathways.
- Immunohistochemistry in 370 kidney neoplasm patients to assess clinical significance.
Main Results:
- DNAJB4 expression was significantly lower in tumor tissues across multiple cancers and in kidney neoplasms.
- Reduced DNAJB4 expression correlated with poorer clinical outcomes, advanced tumor stages, and specific genomic/immune profiles.
- Lower DNAJB4 levels were linked to unfavorable progression-free and overall survival in kidney neoplasms.
Conclusions:
- DNAJB4 is a significant tumor suppressor and prognostic biomarker in pan-cancer, especially in kidney neoplasms.
- DNAJB4 expression is associated with tumorigenesis, cancer staging, and patient prognosis.
- Targeting DNAJB4 presents a potential therapeutic strategy for various cancers.
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