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Exploring the comorbidity mechanisms of ITGB2 in rheumatoid arthritis and membranous nephropathy through integrated
Wenlong Cao1, Yuqin Wang2, Jing Xiong1
1Department of Nephrology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.
Background:
Patients with rheumatoid arthritis (RA) are more likely to comorbid renal diseases, with membranous nephropathy (MN) being the most common. This study aimed to explore the common pathogenesis between RA and MN using integrated bioinformatics analysis.
Methods:
Bulk and single-cell RNA sequencing datasets were obtained from the Gene Expression Omnibus and ImmPort databases. Differential expressed genes (DEGs) were identified and enrichment analysis was performed. Topology analysis and the random forest algorithm were applied to identify hub genes. The single-sample Gene Set Enrichment Analysis method was used to assess immune infiltration. Single-cell RNA sequencing analysis was employed to compare the transcript levels of key gene across different cell types. Pseudotime analysis was conducted using Monocle3, and cellular communication was analyzed with CellChat. The L1000FWD database was used to identify potential drugs, and molecular docking was performed.
Results:
66 common upregulated DEGs were identified, primarily associated with leukocyte migration and the chemokine signaling pathway. ITGB2 was finally identified as the shared pathogenic gene of both RA and MN. ITGB2 was predominantly expressed in macrophages, and its expression increased as M0 macrophages differentiated into M1 macrophages. BAFF signaling between macrophages with high ITGB2 expression and B cells/plasma cells was enhanced. Small molecules targeting ITGB2, including LY-294002 and CP466722, may serve as potential drugs for both RA and MN.
Conclusion:
As the pathogenic gene shared by both RA and MN, ITGB2 may play a role in M1 macrophage polarization and contribute to the maturation and differentiation of B cells through BAFF signaling.
Insights
Rheumatoid arthritis (RA) and membranous nephropathy (MN) share a common pathogenic gene, ITGB2. This gene influences macrophage polarization and B cell maturation, suggesting potential therapeutic targets for both diseases.
Area of Science:
- Immunology
- Nephrology
- Bioinformatics
Background:
- Rheumatoid arthritis (RA) patients frequently develop comorbid renal diseases, most commonly membranous nephropathy (MN).
- Understanding the shared pathogenesis between RA and MN is crucial for developing effective treatments.
Purpose of the Study:
- To investigate the common molecular mechanisms underlying rheumatoid arthritis and membranous nephropathy.
- To identify shared pathogenic genes and pathways using integrated bioinformatics analysis.
Main Methods:
- Acquired and analyzed bulk and single-cell RNA sequencing data from public databases.
- Identified differentially expressed genes (DEGs), hub genes, and immune cell infiltration.
- Utilized pseudotime and cell communication analyses to explore gene function and interactions.
- Screened for potential drugs targeting identified key genes.
Main Results:
- Identified 66 common upregulated DEGs linked to leukocyte migration and chemokine signaling.
- ITGB2 was confirmed as a shared pathogenic gene in RA and MN.
- ITGB2 expression increased during M0 to M1 macrophage differentiation, enhancing BAFF signaling between macrophages and B cells.
- Potential drugs targeting ITGB2, such as LY-294002 and CP466722, were identified.
Conclusions:
- ITGB2 is a key shared pathogenic gene in RA and MN.
- ITGB2 may drive M1 macrophage polarization and B cell differentiation via BAFF signaling.
- Targeting ITGB2 presents a potential therapeutic strategy for both RA and MN.
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