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Updated: Sep 14, 2025

Methodology for the Study of Horizontal Gene Transfer in Staphylococcus aureus
Published on: March 10, 2017
Prophage-encoded methyltransferase drives adaptation of community-acquired methicillin-resistant Staphylococcus
Robert J Ulrich1, Magdalena Podkowik1,2, Rebecca Tierce3
1Department of Medicine and.
Abstract:
We recently described the evolution of a community-acquired methicillin-resistant Staphylococcus aureus (CA-MRSA) USA300 variant responsible for an outbreak of skin and soft tissue infections. Acquisition of a mosaic version of the Φ11 prophage (mΦ11) that increases skin abscess size was an early step in CA-MRSA adaptation that primed the successful spread of the clone. The present study shows how prophage mΦ11 exerts its effect on virulence for skin infection without encoding known toxin or fitness genes. Abscess size and skin inflammation were associated with DNA methylase activity of an mΦ11-encoded adenine methyltransferase (designated pamA). pamA increased expression of fibronectin-binding protein A (fnbA; FnBPA), and inactivation of fnbA eliminated the effect of pamA on abscess virulence without affecting strains lacking pamA. Thus, fnbA is a pamA-specific virulence factor. Mechanistically, pamA was shown to promote biofilm formation in vivo in skin abscesses, a phenotype linked to FnBPA's role in biofilm formation. Collectively, these data reveal a critical mechanism - epigenetic regulation of staphylococcal gene expression - by which phage can regulate virulence to drive adaptive leaps by S. aureus.
Insights
A specific phage, mΦ11, enhances Staphylococcus aureus virulence by epigenetically regulating fibronectin-binding protein A (fnbA). This mechanism drives adaptive leaps in bacterial virulence, increasing skin abscess size and inflammation.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- Community-acquired methicillin-resistant Staphylococcus aureus (CA-MRSA) USA300 is a significant pathogen.
- A variant acquiring mosaic Φ11 prophage (mΦ11) causes skin and soft tissue infections, with increased abscess size.
- The mechanism by which mΦ11 enhances virulence is not fully understood.
Purpose of the Study:
- To elucidate the mechanism by which mΦ11 enhances CA-MRSA virulence in skin infections.
- To identify specific genes and pathways regulated by mΦ11 that contribute to virulence.
- To understand the role of epigenetic regulation in bacterial adaptation and spread.
Main Methods:
- Genetic inactivation of mΦ11-encoded genes, including the adenine methyltransferase (pamA).
- Assessment of abscess size and skin inflammation in vivo.
- Quantitative reverse transcription-PCR to measure gene expression (fnbA).
- Biofilm formation assays.
Main Results:
- The mΦ11-encoded adenine methyltransferase (pamA) is responsible for increased abscess size and skin inflammation.
- pamA upregulates the expression of fibronectin-binding protein A (fnbA).
- Inactivation of fnbA abrogates pamA-mediated virulence, identifying fnbA as a pamA-specific virulence factor.
- pamA promotes in vivo biofilm formation in skin abscesses, linked to FnBPA.
Conclusions:
- Phage-mediated epigenetic regulation of staphylococcal gene expression is a critical mechanism for virulence.
- pamA, an mΦ11-encoded DNA methylase, enhances S. aureus virulence by upregulating fnbA expression.
- This mechanism drives adaptive evolution in S. aureus, facilitating the spread of virulent clones.
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