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Updated: Sep 14, 2025

Characterize Disease-related Mutants of RAF Family Kinases by Using a Set of Practical and Feasible Methods
Published on: July 17, 2019
A neomorphic protein interface catalyzes covalent inhibition of RASG12D aspartic acid in tumors
Caroline Weller1, G Leslie Burnett1, Lingyan Jiang1
1Revolution Medicines, Inc., Redwood City, CA, USA.
Abstract:
Mutant RAS proteins are among the most prevalent drivers of human cancer, and the glycine to aspartic acid mutation at codon 12 (G12D) is the most common variant. Mutation-selective covalent inhibitors spare RAS in healthy tissue and enable extended pharmacodynamic effect, but covalent targeting of RASG12D is hindered by low nucleophilicity and high proteomic abundance of carboxylic acids. We overcame these challenges with compounds that bind cyclophilin A (CYPA) to create a neomorphic protein-protein interface between CYPA and active RAS that enables selective, enzyme-like rate enhancement of the covalent reaction between D12 and electrophilic warheads with exceptionally low intrinsic reactivity. This approach yielded orally bioavailable compounds with marked antitumor activity in multiple preclinical models of KRASG12D cancers, including the investigational agent zoldonrasib (RMC-9805) currently undergoing clinical evaluation (NCT06040541).
Insights
Researchers developed novel covalent inhibitors targeting KRASG12D cancer by creating a unique protein interaction. This approach enables potent drug delivery, showing promise in preclinical cancer models.
Area of Science:
- Oncology
- Molecular Biology
- Drug Discovery
Background:
- Mutant RAS proteins, particularly KRASG12D, are key drivers in numerous human cancers.
- Targeting KRASG12D with covalent inhibitors is challenging due to low reactivity and high abundance of similar molecules in the body.
Purpose of the Study:
- To overcome the challenges in covalently targeting KRASG12D.
- To develop novel inhibitors with enhanced selectivity and efficacy against KRASG12D-driven cancers.
Main Methods:
- Developed compounds that bind to cyclophilin A (CYPA).
- Engineered a novel protein-protein interface between CYPA and active RAS.
- Utilized this interface to enhance the reaction rate of covalent inhibitors with low intrinsic reactivity.
Main Results:
- Achieved selective, enzyme-like rate enhancement for covalent modification of RASG12D.
- Developed orally bioavailable compounds demonstrating significant antitumor activity in preclinical models.
- Identified zoldonrasib (RMC-9805) as a promising investigational agent currently in clinical trials.
Conclusions:
- The CYPA-RAS binding strategy effectively overcomes limitations in targeting KRASG12D.
- This approach yields potent and selective covalent inhibitors for KRASG12D-driven cancers.
- The findings support the clinical development of novel therapeutics for challenging cancer mutations.
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