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Updated: Sep 13, 2025

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Genetic inference of on-target and off-target side-effects of antipsychotic medications
Andrew R Elmore1,2, Aws Sadik1,2, Lavinia Paternoster1,2
1NIHR Bristol Biomedical Research Centre, University Hospitals Bristol and Weston NHS Foundation Trust and University of Bristol, Bristol, United Kingdom.
Abstract:
It is often difficult to ascertain whether patient-reported side-effects are caused by a drug, and if so, through which mechanism. Adverse side-effects are the primary cause of antipsychotic drug discontinuation rather than poor efficacy. Using a novel method combining genetic and drug binding affinity data, we investigated evidence of causal mechanisms for 80 reported side-effects of 6 commonly prescribed antipsychotic drugs which together target 68 receptors. We analysed publicly available drug binding affinity data and genetic association data using Mendelian randomization and genetic colocalization to devise a representative 'score' for each combination of drug, side-effect, and receptor. We show that 36 side-effects are likely caused by drug action through 30 receptors, which are mainly attributable to off-target effects (26 off-target receptors underlying 39 side-effects). This method allowed us to distinguish which reported side-effects have evidence of causality. Of individual drugs, clozapine has the largest cumulative side-effect profile (Score = 57.5, SE = 11.2), and the largest number of side-effects (n = 36). We show that two well-known side-effects for clozapine, neutropenia and weight change, are underpinned by the action of GABA and CHRM3 receptors respectively. Our novel genetic approach can map side-effects to drugs and elucidate underlying mechanisms, which could potentially inform clinical practice, drug repurposing, and pharmacological development. Further, this method can be generalized to infer the on-target and off-target effects of drugs at any stage of the drug development pipeline.
Insights
A new genetic method links antipsychotic drug side-effects to specific receptor actions, identifying causal mechanisms for 36 adverse events. This approach helps distinguish drug-induced side-effects and understand their origins.
Area of Science:
- Pharmacology
- Genetics
- Computational Biology
Background:
- Adverse drug reactions are a major reason for discontinuing antipsychotic medications.
- Understanding the causal mechanisms of drug side-effects is crucial for clinical practice and drug development.
Purpose of the Study:
- To develop and apply a novel method combining genetic and drug binding data to investigate causal mechanisms of antipsychotic drug side-effects.
- To identify specific receptors and drug actions responsible for reported side-effects.
Main Methods:
- Utilized Mendelian randomization and genetic colocalization on public drug binding affinity and genetic association data.
- Devised a scoring system to quantify the causal link between drugs, receptors, and side-effects.
- Analyzed 80 reported side-effects across 6 common antipsychotic drugs targeting 68 receptors.
Main Results:
- Identified likely causal mechanisms for 36 out of 80 investigated side-effects, involving 30 distinct receptors.
- Found that 39 side-effects were primarily linked to off-target drug effects at 26 receptors.
- Clozapine exhibited the most extensive side-effect profile, linked to 36 side-effects, including neutropenia (GABA receptor) and weight change (CHRM3 receptor).
Conclusions:
- The novel genetic approach successfully maps drug side-effects to underlying receptor mechanisms, distinguishing causal links.
- Findings can inform clinical decisions, guide drug repurposing, and aid pharmacological development by elucidating on-target and off-target effects.
- The method is generalizable for drug effect analysis throughout the development pipeline.
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