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In Vitro Selection of Engineered Transcriptional Repressors for Targeted Epigenetic Silencing
Published on: May 5, 2023
Endogenous Ribonucleases: Therapeutic Targeting of the Transcriptome Through Oligonucleotide-Triggered RNA
Daria A Chiglintseva1, Olga A Patutina1, Marina A Zenkova1
1Laboratory of Nucleic Acids Biochemistry, Institute of Chemical Biology and Fundamental Medicine SB RAS, 630090 Novosibirsk, Russia.
Abstract:
The selective regulation of gene expression at the RNA level represents a rapidly evolving field offering substantial clinical potential. This review examines the molecular mechanisms of intracellular enzymatic systems that utilize single-stranded nucleic acids to downregulate specific RNA targets. The analysis encompasses antisense oligonucleotides and synthetic mimics of small interfering RNA (siRNA), microRNA (miRNA), transfer RNA-derived small RNA (tsRNA), and PIWI-interacting RNA (piRNA), elucidating their intricate interactions with crucial cellular machinery, specifically RNase H1, RNase P, AGO, and PIWI proteins, mediating their biological effects. The functional and structural characteristics of these endonucleases are examined in relation to their mechanisms of action and resultant therapeutic outcomes. This comprehensive analysis illuminates the interactions between single-stranded nucleic acids and their endonuclease partners, covering antisense inhibition pathways as well as RNA interference processes. This field of research has important implications for advancing targeted RNA modulation strategies across various disease contexts.
Insights
This review explores how small RNA molecules and antisense oligonucleotides regulate gene expression by targeting specific RNA. These mechanisms, involving enzymes like RNase H1 and AGO proteins, offer promising therapeutic strategies for various diseases.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Gene expression regulation at the RNA level is a rapidly advancing field with significant clinical applications.
- Intracellular enzymatic systems that target specific RNA molecules are key to this regulation.
Purpose of the Study:
- To review the molecular mechanisms of RNA-targeting enzymatic systems.
- To elucidate the interactions between single-stranded nucleic acids and cellular machinery.
- To examine the therapeutic potential of these RNA modulation strategies.
Main Methods:
- Analysis of antisense oligonucleotides and synthetic mimics of small interfering RNA (siRNA), microRNA (miRNA), transfer RNA-derived small RNA (tsRNA), and PIWI-interacting RNA (piRNA).
- Examination of interactions with cellular endonucleases including RNase H1, RNase P, AGO, and PIWI proteins.
- Review of functional and structural characteristics of these endonucleases and their mechanisms of action.
Main Results:
- Detailed elucidation of how various small RNA molecules and antisense oligonucleotides interact with specific endonucleases.
- Understanding of the mechanisms by which these interactions lead to RNA downregulation.
- Identification of the functional and structural roles of RNase H1, RNase P, AGO, and PIWI proteins in these processes.
Conclusions:
- The study provides a comprehensive overview of RNA-targeting mechanisms and their endonuclease partners.
- These interactions are crucial for both antisense inhibition and RNA interference pathways.
- Targeted RNA modulation strategies hold significant promise for treating diverse diseases.
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