Endogenous Ribonucleases: Therapeutic Targeting of the Transcriptome Through Oligonucleotide-Triggered RNA

Daria A Chiglintseva1, Olga A Patutina1, Marina A Zenkova1

  • 1Laboratory of Nucleic Acids Biochemistry, Institute of Chemical Biology and Fundamental Medicine SB RAS, 630090 Novosibirsk, Russia.

Biomolecules
|July 29, 2025
PubMed

Insights

This review explores how small RNA molecules and antisense oligonucleotides regulate gene expression by targeting specific RNA. These mechanisms, involving enzymes like RNase H1 and AGO proteins, offer promising therapeutic strategies for various diseases.

Area of Science:

  • Molecular Biology
  • Genetics
  • Biochemistry

Background:

  • Gene expression regulation at the RNA level is a rapidly advancing field with significant clinical applications.
  • Intracellular enzymatic systems that target specific RNA molecules are key to this regulation.

Purpose of the Study:

  • To review the molecular mechanisms of RNA-targeting enzymatic systems.
  • To elucidate the interactions between single-stranded nucleic acids and cellular machinery.
  • To examine the therapeutic potential of these RNA modulation strategies.

Main Methods:

  • Analysis of antisense oligonucleotides and synthetic mimics of small interfering RNA (siRNA), microRNA (miRNA), transfer RNA-derived small RNA (tsRNA), and PIWI-interacting RNA (piRNA).
  • Examination of interactions with cellular endonucleases including RNase H1, RNase P, AGO, and PIWI proteins.
  • Review of functional and structural characteristics of these endonucleases and their mechanisms of action.

Main Results:

  • Detailed elucidation of how various small RNA molecules and antisense oligonucleotides interact with specific endonucleases.
  • Understanding of the mechanisms by which these interactions lead to RNA downregulation.
  • Identification of the functional and structural roles of RNase H1, RNase P, AGO, and PIWI proteins in these processes.

Conclusions:

  • The study provides a comprehensive overview of RNA-targeting mechanisms and their endonuclease partners.
  • These interactions are crucial for both antisense inhibition and RNA interference pathways.
  • Targeted RNA modulation strategies hold significant promise for treating diverse diseases.

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