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Updated: Sep 13, 2025

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Physically Consistent Self-Diffusion Coefficient Calculation with Molecular Dynamics and Symbolic Regression.

Dimitrios Angelis1, Chrysostomos Georgakopoulos1, Filippos Sofos1

  • 1Condensed Matter Physics Laboratory, Department of Physics, University of Thessaly, 35100 Lamia, Greece.

International Journal of Molecular Sciences
|July 29, 2025
PubMed
Summary
This summary is machine-generated.

Machine learning now predicts self-diffusion coefficients in molecular fluids using simple macroscopic properties. This bypasses complex atomistic simulations, offering a universal approach for bulk and confined systems.

Keywords:
diffusion coefficientmolecular dynamicsmolecular fluidssymbolic regression

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Area of Science:

  • Computational physics and chemistry
  • Materials science
  • Chemical engineering

Background:

  • Calculating self-diffusion coefficients is crucial for understanding fluid behavior in bulk and confined systems.
  • Traditional methods, like mean squared displacement, are computationally intensive and complex.
  • Developing efficient predictive models for fluid dynamics is an ongoing challenge.

Purpose of the Study:

  • To develop a universal, computationally efficient approach for calculating self-diffusion coefficients in molecular fluids.
  • To derive analytical expressions correlating self-diffusion coefficients with macroscopic fluid properties.
  • To bypass traditional atomistic-level simulation methods.

Main Methods:

  • Utilizing machine learning, specifically symbolic regression, trained on molecular dynamics simulation data.
  • Correlating self-diffusion coefficients with macroscopic parameters: density, temperature, and confinement width.
  • Employing genetic programming to select simple, interpretable symbolic expressions.

Main Results:

  • Derived new analytical expressions for self-diffusion coefficients in nine molecular fluids.
  • Extracted a universal equation applicable to all tested fluids, capturing molecular behavior.
  • Demonstrated accurate prediction of self-diffusion coefficients, bypassing computationally demanding methods.

Conclusions:

  • Machine learning provides a powerful, efficient tool for predicting self-diffusion coefficients.
  • The derived universal equation offers a physically consistent and interpretable model for fluid behavior.
  • This approach advances fundamental understanding and aids in designing nanoscale confinement devices.