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Updated: May 7, 2026

Assessing Cellular Target Engagement by SHP2 PTPN11 Phosphatase Inhibitors
Published on: July 17, 2020
Structure-guided expansion strategy unveils potent allosteric SHP2 inhibitors with synergistic efficacy against AML
Maoqian Zhang1, Shuyun Wu1, Menghui Liu1
1School of Pharmacy, Nanjing University of Chinese Medicine, Nanjing, 210023, China.
Abstract:
SHP2, an oncogenic phosphatase pivotal in RAS-MAPK, PI3K-AKT, and JAK-STAT signaling, represents a compelling therapeutic target in malignancies driven by its hyperactivation. While allosteric inhibitors like SHP099 have overcome historical challenges of orthosteric agents by stabilizing SHP2's autoinhibited conformation, opportunities remain to enhance potency, selectivity, and clinical utility. Here, we report a structure-guided expansion strategy leveraging detailed profiling of the tunnel-shaped allosteric pocket to design next-generation inhibitors. Systematic optimization of a pyrrolo[2,1-f][1,2,4]triazin-4(3H)-one scaffold yielded compounds B1 and B8, which exhibit nanomolar enzymatic inhibition (IC50 = 39 and 15 nM), acceptable pharmacokinetics, and potential oral bioavailability. Strikingly, B8 demonstrated profound synergy with MCL-1 inhibitor VU661013 in acute myeloid leukemia (AML) models, a novel discovery underscoring the therapeutic potential of dual SHP2/MCL-1 targeting. Our work not only advances the rational design of oral allosteric SHP2 inhibitors but also unveils a critical vulnerability in AML through SHP2-MCL-1 co-targeting, offering a roadmap for combinatorial regimens to improve outcomes in high-risk cancers.
Insights
Next-generation allosteric inhibitors targeting SHP2 (Src homology 2 domain-containing protein tyrosine phosphatase 2) show enhanced potency. Compound B8 synergizes with MCL-1 inhibitors in acute myeloid leukemia models, revealing a novel therapeutic strategy.
Area of Science:
- Oncology
- Pharmacology
- Structural Biology
Background:
- SHP2 phosphatase is a key driver in cancers via RAS-MAPK, PI3K-AKT, and JAK-STAT pathways.
- Allosteric SHP2 inhibitors offer advantages over orthosteric agents by stabilizing the autoinhibited conformation.
- Further optimization is needed to improve the potency, selectivity, and clinical efficacy of SHP2 inhibitors.
Purpose of the Study:
- To design and synthesize novel, next-generation allosteric SHP2 inhibitors.
- To evaluate the enzymatic activity, pharmacokinetic properties, and oral bioavailability of new compounds.
- To investigate the therapeutic potential of dual SHP2 and MCL-1 targeting in acute myeloid leukemia.
Main Methods:
- Structure-guided drug design utilizing detailed profiling of the SHP2 allosteric pocket.
- Systematic optimization of a pyrrolo[2,1-f][1,2,4]triazin-4(3H)-one scaffold.
- In vitro enzymatic assays, pharmacokinetic studies, and in vivo efficacy studies in acute myeloid leukemia models.
Main Results:
- Compounds B1 and B8 achieved nanomolar enzymatic inhibition (IC50 = 39 nM and 15 nM, respectively).
- Compounds B1 and B8 demonstrated acceptable pharmacokinetics and potential for oral bioavailability.
- Compound B8 exhibited significant synergy with the MCL-1 inhibitor VU661013 in preclinical AML models.
Conclusions:
- Rational design strategies can yield potent and orally bioavailable allosteric SHP2 inhibitors.
- Dual targeting of SHP2 and MCL-1 presents a promising therapeutic approach for acute myeloid leukemia.
- This study provides a foundation for developing combinatorial regimens to improve outcomes in high-risk cancers.
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