A novel deep learning-based brain age prediction framework for routine clinical MRI scans
Hyunwoong Kim1,2, Seongbeom Park1, Sang Won Seo3,4,5,6
1BeauBrain Healthcare, Inc, Seoul, South Korea.
Npj Aging
|July 29, 2025
Summary
We developed a novel deep learning framework for predicting brain age from 2D MRI scans. This tool accurately estimates brain age and shows potential for early disease detection in clinical settings.
Area of Science:
- Neuroimaging
- Artificial Intelligence
- Gerontology
Background:
- Physiological brain aging correlates with cognitive decline and structural brain changes.
- Brain age prediction using routine 2D MRI scans is challenging and underexplored.
- Existing methods often struggle with the accuracy and speed required for clinical application.
Purpose of the Study:
- To develop and validate a novel deep learning framework for accurate brain age prediction from clinical 2D T1-weighted MRI scans.
- To assess the framework's performance on cognitively unimpaired individuals and its association with neurodegenerative diseases.
- To explore the potential of this framework for routine clinical examinations and early detection of brain abnormalities.
Main Methods:
- A deep learning model was trained using a large dataset of 3D MRI scans (N=8681).
- The model was applied to predict brain age from 2D MRI scans of cognitively unimpaired (CU) subjects (N=175).
- Age bias correction was applied, and performance was evaluated using Mean Absolute Error (MAE) and Pearson correlation (r).
Main Results:
- The framework achieved accurate and rapid brain age prediction on clinical 2D MRI scans from CU subjects (MAE=2.73 years, r=0.918).
- A significantly greater brain age gap was observed in subjects with Alzheimer's disease (AD) compared to CU subjects (p<0.001).
- Increased brain age gap correlated with disease progression in both AD (p<0.05) and Parkinson's disease (p<0.01).
Conclusions:
- The developed deep learning framework offers a robust method for brain age prediction using readily available 2D clinical MRI scans.
- The brain age gap serves as a potential imaging biomarker for neurodegenerative diseases like AD and Parkinson's.
- This framework holds promise for integration into routine clinical practice to aid in early detection and improve patient outcomes.


