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Detection of Horizontal Gene Transfer Mediated by Natural Conjugative Plasmids in E. coli
Published on: March 24, 2023
IncN-R plasmid co-integration contributing to extensive drug resistance in Escherichia coli isolated from a canine
Parinya Sroithongkham1, Chavin Leelapsawas2, Rusmin Indra2
1Division of Pathobiology, Faculty of Veterinary Medicine, Khon Kaen University, Khon Kaen, Thailand.
Abstract:
The emergence of multidrug-resistant (MDR) plasmids poses a significant global public health threat. This study characterized a novel multi-replicon IncN-R MDR plasmid pCUVET19-1426.1, harboring blaCTX-M-55 and 12 additional antimicrobial resistance genes (ARGs) in a newly identified Escherichia coli sequence type 13037, isolated from a canine prostatic abscess. Using antimicrobial resistance (AMR) profiling and genomic analysis, we elucidated the characteristics, evolution, and transferability of plasmid pCUVET19-1426.1, which contributed to the extensively drug-resistant phenotype of the bacterial strain. The plasmid is genetically related to IncN plasmids found in Enterobacterales from humans and animals in Thailand, suggesting plasmid circulation and evolution. Multiple IS26 elements enhanced the plasmid plasticity for co-integration and acquisition of ARGs, underscoring its significant clinical and public health impact. Our findings emphasize the importance of genomic insights in understanding plasmid evolution and its role in AMR development in E. coli, causing opportunistic infections.IMPORTANCEThis study highlights the significance of plasmid evolution to generate a new multi-replicon IncN-R plasmid encoding an extended-spectrum β-lactamase and multidrug resistance (MDR) in a new Escherichia coli sequence type 13037 from a canine prostatic abscess. We provide insights into the genetic mechanisms facilitating the spread and persistence of resistance genes, driving the emergence of an extensively drug-resistant phenotype. The presence of an MDR plasmid in the clinical E. coli isolate critically limited antimicrobial options for extraintestinal infections in small animal veterinary medicine. The plasmid's genetic relatedness underscores the interconnectedness of human and animal health, emphasizing the importance of a One Health approach. These findings emphasize the need to enhance genomic surveillance to monitor the evolution of bacterial plasmids and their role in antimicrobial resistance development in both human and animal health.
Insights
A novel multidrug-resistant plasmid was identified in a dog, carrying genes for extended-spectrum beta-lactamase and 12 other resistance genes. This discovery highlights plasmid evolution and its impact on antimicrobial resistance in Escherichia coli.
Area of Science:
- Microbiology
- Genomics
- Antimicrobial Resistance
Background:
- Multidrug-resistant (MDR) plasmids are a significant global public health concern.
- The emergence of novel resistance genes and plasmids in bacterial pathogens contributes to antimicrobial resistance (AMR).
- Understanding plasmid evolution and transfer is crucial for combating AMR.
Purpose of the Study:
- To characterize a novel multi-replicon IncN-R MDR plasmid, pCUVET19-1426.1.
- To investigate the genetic basis of antimicrobial resistance in a new *Escherichia coli* sequence type.
- To elucidate the evolution, characteristics, and transferability of the identified plasmid.
Main Methods:
- Antimicrobial resistance (AMR) profiling of the *Escherichia coli* isolate.
- Whole-genome sequencing and genomic analysis of the plasmid pCUVET19-1426.1.
- Comparative genomic analysis to assess plasmid relatedness and evolution.
Main Results:
- A novel multi-replicon IncN-R MDR plasmid, pCUVET19-1426.1, was identified in *Escherichia coli* ST13037 from a canine prostatic abscess.
- The plasmid harbors *bla*CTX-M-55 and 12 additional antimicrobial resistance genes (ARGs), contributing to an extensively drug-resistant phenotype.
- Genetic analysis revealed plasmid plasticity due to multiple IS*26* elements, facilitating ARG acquisition and co-integration, with relatedness to IncN plasmids from Thailand.
Conclusions:
- Plasmid evolution plays a critical role in generating MDR strains, posing a threat to both animal and human health.
- Genomic insights into plasmid characteristics and spread are essential for understanding and controlling AMR.
- The findings underscore the importance of a One Health approach and enhanced genomic surveillance for monitoring plasmid evolution and AMR.
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