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Published on: May 7, 2020
Whole Exome Sequencing Identified a Stop-Gained Mutation in DYSF Gene Associated With Dysferlinopathy in an Iranian
Saba Baghshomali1, Asiyeh Jebelli2, Mina Kazemzadeh3
1Department of Biological Sciences, Faculty of Basic Sciences, Higher Education Institute of Rab-Rashid, Tabriz, Iran.
Abstract:
Introduction: Muscular dystrophy (MD) refers to a group of hereditary disorders characterized by progressive muscle degeneration, often caused by a deficiency or insufficient levels of glycoproteins in muscle cell membranes. Mutations in various genes lead to different types of MD, each with distinct clinical manifestations and inheritance patterns. The genetic heterogeneity of MD complicates the identification of the causative genes. Materials and Methods: This research was conducted to identify the genetic basis of MD in an Iranian family with three affected members. Whole exome sequencing (WES) was performed on a proband who had initially been misdiagnosed with polymyositis. Following the identification of the disease-causing variant via WES, cosegregation analysis was carried out among two affected siblings, the asymptomatic parents, and one unaffected sibling. Results: WES identified a homozygous nonsense variant (c.6001C>T, p.Gln2001Ter) in Exon 53 of the DYSF gene, which encodes dysferlin, a transmembrane protein essential for membrane protection and repair following damage. This stop-gain mutation results in a nonfunctional truncated protein lacking the transmembrane helix, preventing its anchorage to the membrane. Dysfunction of dysferlin is associated with limb-girdle muscular dystrophy 2B (LGMD2B) and Miyoshi myopathy. Discussion: Bioinformatics analyses and clinical findings confirmed the pathogenicity of this variant in a homozygous state, consistent with autosomal recessive inheritance. Furthermore, structural modeling suggested that the mutation significantly disrupts the tertiary structure of dysferlin. Since the disorder onset in the proband and his two affected sisters began in the proximal limb muscles, the condition was classified as LGMD. The study highlights the diagnostic value of WES in accurately identifying disease-causing variants, offering substantial improvements in time and cost efficiency over conventional diagnostic procedures.
Insights
Whole exome sequencing identified a novel DYSF gene mutation causing limb-girdle muscular dystrophy in an Iranian family. This genetic discovery aids in diagnosing muscular dystrophy (MD) and understanding its hereditary basis.
Area of Science:
- Genetics
- Molecular Biology
- Neurology
Background:
- Muscular dystrophy (MD) encompasses hereditary disorders of progressive muscle degeneration.
- Genetic heterogeneity complicates identifying causative genes for various MD types.
- Deficiencies in muscle cell membrane glycoproteins are often implicated in MD.
Purpose of the Study:
- To identify the genetic basis of muscular dystrophy in an Iranian family.
- To investigate a novel variant in the DYSF gene.
- To confirm the pathogenicity of the identified variant through cosegregation analysis.
Main Methods:
- Whole exome sequencing (WES) was performed on a proband.
- Cosegregation analysis was conducted on affected and unaffected family members.
- Bioinformatics and structural modeling were utilized to assess variant pathogenicity.
Main Results:
- A homozygous nonsense variant (c.6001C>T, p.Gln2001Ter) in the DYSF gene was identified.
- This mutation leads to a truncated, nonfunctional dysferlin protein, crucial for muscle membrane repair.
- The variant is associated with limb-girdle muscular dystrophy 2B (LGMD2B) and Miyoshi myopathy.
Conclusions:
- The identified DYSF variant causes muscular dystrophy with autosomal recessive inheritance.
- The mutation disrupts dysferlin's tertiary structure and membrane anchorage.
- WES is a valuable tool for accurate and efficient diagnosis of muscular dystrophy.
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