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Primer-Free Aptamer Selection Using A Random DNA Library
Published on: July 26, 2010
EDTA-Masked Tl+ Detection Using a Pair of Non-G-Quadruplex Aptamers with Opposite Fluorescence Responses
Xuesong Li1,2, Xiaohan Zhang2, Jin Wang2,3
1School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China.
Abstract:
Thallium (Tl) is a highly toxic trace heavy metal that poses significant environmental and ecological risks. Current analytical methods for its detection are limited to instrumentation. In this study, we employed a library-immobilized SELEX (systematic evolution of ligands by exponential enrichment) technique and isolated a pair of non-G-quadruplex DNA aptamers that can specifically recognize Tl+. Among them, the Tl-3 aptamer exhibited a dissociation constant (Kd) of 4.5 μM by a thioflavin T (ThT) fluorescence assay, where the fluorescence dropped upon adding Tl+. Using isothermal titration calorimetry (ITC), its Kd was determined to be 17.9 μM. Another aptamer, Tl-5, showed increased ThT fluorescence upon Tl+ addition, indicating a distinct structural feature. The Kd values for Tl-5 were 14.0 μM (ThT) and 34.2 μM (ITC). This pair of Tl+ aptamers made it possible to tell Tl+ apart from a few general G-quadruplex binding metals such as K+ and Pb2+. Taking advantage of the low affinity of Tl+ to EDTA, the responses of both aptamers to other metal ions were negligible using EDTA as a masking agent. The ThT-based label-free fluorescent detection of Tl+ lake water achieved limits of detection (LODs) of 0.8 and 1.6 μM using Tl-3 and Tl-5, respectively. This pair of aptamers holds great promise for the environmental analysis of Tl+.

