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Updated: Sep 13, 2025

Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
Uncovering dual oscillatory regimes in p53-mdm2 dynamics: A data-driven modeling approach with implications for
Kathryn K Menta1, Majid Bani-Yaghoub1, Bi-Botti C Youan2
1Division of Computing, Analytics & Mathematics, School of Science and Engineering, University of Missouri-Kansas City, 5100 Rockhill Rd., Kansas City, MO 64110, USA.
Abstract:
Quantifying the dynamic interplay between p53 and Mdm2 is critical for uncovering their roles in cancer suppression and therapeutic targeting. Experimental studies have shown that p53-Mdm2 interactions exhibit oscillatory behavior in response to DNA damage. However, several mathematical models fail to sustain these oscillations or do not fit well with the experimental data, instead converging to constant steady-state values of p53 and Mdm2, which is unrealistic. In this study, we develop a simple yet robust ordinary differential equation model that accurately quantifies different stable periodic solutions (limit cycles) for p53-Mdm2 dynamics. Specifically, using a two-step numerical calibration algorithm, we validate the model against four experimental datasets. The calibrated model fits the data well and reveals two distinct oscillatory regimes: one in which Mdm2 oscillates with an amplitude 2.67 times greater than that of p53, suggesting a strongly amplified feedback response, and another in which Mdm2 exhibits variable but consistently lower-amplitude oscillations relative to p53. The observed variability in oscillatory behavior may support tumor suppression by enabling context-dependent activation of p53 targets, allowing cells to fine-tune stress responses.
Insights
This study presents a new mathematical model for p53-Mdm2 dynamics, revealing distinct oscillatory behaviors crucial for cancer suppression and therapeutic targeting. The model accurately fits experimental data, offering insights into cellular stress responses.
Area of Science:
- Biophysics
- Systems Biology
- Cancer Research
Background:
- The p53-Mdm2 interaction is a key regulator of cancer suppression.
- Experimental data show p53-Mdm2 dynamics oscillate following DNA damage.
- Existing mathematical models often fail to replicate these oscillations accurately.
Purpose of the Study:
- To develop a robust mathematical model for p53-Mdm2 dynamics.
- To accurately quantify stable periodic solutions (limit cycles) of p53-Mdm2 interactions.
- To validate the model against experimental data and explore oscillatory regimes.
Main Methods:
- Developed a simple ordinary differential equation model.
- Employed a two-step numerical calibration algorithm.
- Validated the model against four distinct experimental datasets.
Main Results:
- The model successfully quantifies stable periodic solutions for p53-Mdm2 dynamics.
- Two distinct oscillatory regimes were identified.
- One regime showed Mdm2 oscillations 2.67 times greater in amplitude than p53, indicating amplified feedback.
Conclusions:
- The developed model accurately captures p53-Mdm2 oscillatory behavior.
- Variability in oscillations may enable context-dependent p53 target activation for fine-tuned stress responses.
- This work provides a foundation for understanding cancer suppression and therapeutic targeting.
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