Impact of terahertz waves in altering C2AB binding to lipid bilayers: Insights from molecular dynamics simulations
Hao-Tian Hao1, Chen Chen1, Yu-Qiang Ma1,2
1Nanjing University, National Laboratory of Solid State Microstructures and Department of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing 210093, China.
Abstract:
The binding of the C2AB domain of the calcium sensor synaptotagmin-1 (Syt1) to lipid bilayers is a critical step in triggering neurotransmitter release at nerve terminals. However, effective regulation of this binding remains a significant challenge. In this study, we used all-atom molecular dynamics (MD) simulations to explore the underlying mechanisms of the C2AB/Ca^{2+}_C2AB interaction with lipid bilayers and examined how external terahertz (THz) waves influence this binding. We first identified the key residues and interactions involved in C2AB/Ca^{2+}_C2AB binding to phospholipids in the absence of THz waves. Then, we analyzed the effects of 42.55 THz waves on the binding dynamics. Importantly, the predominant vibration mode at 42.55 THz waves induces rotational movements of negatively charged phospholipid heads by affecting the vibrations of -COO^{-} and -CH bonds. This shift alters charge distributions within the lipid bilayers, increasing the distance between certain residues and phospholipids, and consequently reducing the binding energy. Overall, our findings suggest that THz radiation can act as a novel modulator of neurotransmitter release by disrupting the Syt1-phospholipid interaction, offering potential insights into the regulation of synaptic activity.
More Related Videos
08:54Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid
Published on: January 25, 2020
07:22Author Spotlight: Evaluating Biophysical Assays for Characterizing PROTACS Ternary Complexes
Published on: January 12, 2024
Related Concept Videos
Noncovalent Attractions in Biomolecules
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
Globular and Fibrous Proteins
Globular proteins are also known as spheroproteins and typically are approximately round in shape. They contain a mix of amino acid types and contain differing sequences in their primary structures. Globular proteins have many different functions, such as enzymes, cellular messengers, and molecular transporters. These roles often require the proteins to be...
Conformations of Cyclohexane
The chair form is the most stable and derives its name from its resemblance to the “easy chair.” In the chair conformation, two carbon atoms are arranged out-of-plane — one above and one below, minimizing the torsional strain. In the chair form, the bond angle is very close to the ideal tetrahedral value,...
Stability of Substituted Cyclohexanes
The two chair conformations of cyclohexanes undergo rapid interconversion at room temperature. Both forms have identical energies and stabilities, each comprising equal amounts of the equilibrium mixture. Replacing a hydrogen atom with a functional group makes the two conformations energetically non-equivalent.
For example, in...
Fischer Projections
Spin–Spin Coupling: Three-Bond Coupling (Vicinal Coupling)
The extent of coupling depends on the C‑C bond length, the two H‑C‑C angles, any electron-withdrawing substituents, and the dihedral angle between the involved orbitals. The...
