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Related Experiment Video

Updated: Sep 13, 2025

A High-throughput Calcium-flux Assay to Study NMDA-receptors with Sensitivity to Glycine/D-serine and Glutamate
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Calcium binding by γ-carboxyglutamic acid: it takes two to tether.

Hans Ippel1, Sem J Peijnenborgh1, Tilman M Hackeng1

  • 1Department of Biochemistry, Cardiovascular Research Institute Maastricht (CARIM), University Maastricht, Maastricht, the Netherlands.

Research and Practice in Thrombosis and Haemostasis
|August 1, 2025
PubMed
Summary

Vitamin K-dependent proteins utilize γ-carboxyglutamic acid (Gla) for calcium binding. This study quantifies Gla’s biophysical properties, revealing cooperative binding enhances affinity and protein structure.

Keywords:
blood coagulation factorscalcium-binding proteinscarboxylic acidsglutamic acidvitamin K

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Area of Science:

  • Biochemistry
  • Structural Biology
  • Biophysics

Background:

  • Vitamin K-dependent proteins feature γ-carboxyglutamic acid (Gla) residues crucial for calcium binding.
  • Gla residues are vital for coagulation factors and mineralization processes.
  • Incomplete biophysical data for Gla hinders molecular dynamics and structure predictions.

Purpose of the Study:

  • To determine calcium binding characteristics (pKa and KD) of Gla in a protein environment.
  • To investigate how Gla positioning influences cooperative calcium binding.
  • To assess the impact of calcium binding on protein structure.

Main Methods:

  • Quantified residue-based pKa of Gla carboxyl groups using pH-dependent NMR.
  • Determined Ca2+ binding affinity (KD) via Ca2+ NMR titrations.
  • Assessed peptide and protein secondary structure using circular dichroism and NMR.

Main Results:

  • Gla exhibited two pKa values (2.62 and 5.02), decreasing upon Ca2+ binding.
  • Single Gla affinity for Ca2+ was low (~15 mM), but cooperativity in two Gla residues increased affinity 25-fold (~0.6 mM).
  • Cooperative calcium binding enhanced α-helical content in model proteins.

Conclusions:

  • Vitamin K-dependent proteins leverage cooperative calcium binding by Gla residues.
  • Experimentally determined pKa and KD values aid in interpreting Gla domain interactions.
  • These findings support molecular dynamics simulations for Gla domains with unknown structures.