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Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Interaction between haploinsufficiency of PTPN2 and patient microbiome promotes autoimmune arthritis in mice
Sho Sendo1, Allison J Vela2, Myungja Ro2
1Dept. of Medicine, University of California San Diego, La Jolla, CA, 92093, United States; Dept. of Rheumatology and Clinical Immunology, Kobe University Hospital, Kobe, Japan.
Abstract:
Gut dysbiosis is observed in patients with rheumatoid arthritis (RA) and juvenile idiopathic arthritis (JIA), however, how it promotes disease in interaction with other environmental and genetic risk factors remains unclear. Here we assessed interactions between gut dysbiosis and RA/JIA-associated loss of function haplotypes of the RA/JIA-associated PTPN2 gene by inducing mannan-induced arthritis in germ-free PTPN2+/+ and PTPN2 haploinsufficient (PTPN2+/-) SKG mice reconstituted with fecal microbiota from six patients with seropositive RA. Mannan-induced arthritis and lymph node T cell immunophenotypes were identical in germ free PTPN2+/+ vs PTPN2+/- SKG mice. While no difference in arthritis severity was seen among PTPN2+/+ mice recipient of RA gut microbiota, two microbiomes (RA#02 and RA#86) enhanced arthritis in PTPN2+/- mice. The microbiome of RA patient microbiota recipient mice exclusively clustered by patient of origin and the RA#86 microbiome was found to carry a significant expansion of Prevotella genera, which is associated with RA dysbiosis. RA#86 microbiota-recipient PTPN2+/- mice selectively displayed increased joint GM-CSF expression and an expansion of CD4+RORγt+FoxP3- T cells in the joints, without evidence of increased intestinal inflammation, gut barrier leakage or expansion of P. copri in post-mannan fecal samples. Monocolonization with P. copri caused enhanced arthritis and CD4+RORγt+FoxP3- T cells expansion in PTPN2+/- vs PTPN2+/+ mice. Our data support current views about P. copri promotion of autoimmune arthritis and suggest that its pathogenicity can be amplified via interaction with a dysbiotic context and risk factors that enhance gut mucosa immune responses.
Insights
Gut dysbiosis and PTPN2 gene variations interact to influence rheumatoid arthritis (RA) development. Prevotella copri exacerbates autoimmune arthritis, particularly in individuals with specific genetic risk factors.
Area of Science:
- Immunology
- Microbiome research
- Genetics
Background:
- Gut dysbiosis is linked to rheumatoid arthritis (RA) and juvenile idiopathic arthritis (JIA).
- The interaction between gut microbiota and genetic risk factors like PTPN2 gene variations in RA/JIA pathogenesis is not fully understood.
Purpose of the Study:
- To investigate the interplay between gut dysbiosis and PTPN2 gene loss-of-function haplotypes in the context of autoimmune arthritis.
- To determine if specific RA-associated gut microbiomes exacerbate arthritis in mice with altered PTPN2 function.
Main Methods:
- Induction of arthritis in germ-free PTPN2+/+ and PTPN2+/- SKG mice using mannan.
- Reconstitution of mice with fecal microbiota from seropositive RA patients.
- Analysis of arthritis severity, T cell immunophenotypes, and gut microbiome composition.
- Monocolonization experiments with Prevotella copri.
Main Results:
- Arthritis severity and T cell phenotypes were similar in germ-free PTPN2+/+ and PTPN2+/- mice.
- Two specific RA microbiomes (RA#02 and RA#86) enhanced arthritis in PTPN2+/- mice.
- RA#86 microbiome, enriched in Prevotella, led to increased joint GM-CSF and CD4+RORγt+FoxP3- T cells in PTPN2+/- mice.
- Prevotella copri monocolonization enhanced arthritis and T cell expansion in PTPN2+/- mice.
Conclusions:
- Prevotella copri promotes autoimmune arthritis, with its pathogenicity amplified by interactions with dysbiotic contexts and genetic risk factors.
- The study highlights a potential mechanism where gut dysbiosis and PTPN2 variations synergistically contribute to RA pathogenesis.

