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Updated: Sep 13, 2025

Population and Single-Cell Analysis of Antibiotic Persistence in Escherichia coli
Published on: March 24, 2023
Antibiotic carry over is a confounding factor for cell-based antimicrobial research applications
Miran Yousri Elfar1, Helen Louise Brown2, Aled Clayton3
1School of Dentistry, Cardiff University, Health Park Campus, Cardiff, CF14 4XY, UK.
Abstract:
Chronic wounds often host pathogens like Staphylococcus aureus, prompting interest in developing new antimicrobial and wound healing strategies, including the utilisation of extracellular vesicles (EVs). Whilst there has been a recent emphasis within the EV community to ensure standardization of characterization and isolation techniques, there has been less focus placed on the upstream tissue culture methodologies used for collection of vesicle-containing conditioned medium (CM). Hence, this study investigated the antimicrobial properties of the CM used for EV enrichment. CM exhibited bacteriostatic effects against penicillin-sensitive S. aureus NCTC 6571, but not penicillin-resistant S. aureus 1061 A. Further analysis revealed that the antimicrobial activity was due to residual antibiotics rather than cell-secreted factors, specifically the retention and release of penicillin to tissue culture plastic surfaces. Pre-washing cells and minimizing antibiotic concentrations in basal medium reduced this carry-over effect. These findings emphasize the importance of controlling antibiotic use in tissue culture to avoid misleading conclusions about the antimicrobial potential of CM or EVs. Researchers should carefully consider medium selection and supplementation during method development as accurately determining the antimicrobial mechanisms of any CM is essential for validating future cell-based therapeutic applications.
Insights
Conditioned medium (CM) from tissue cultures may show antimicrobial effects due to residual antibiotics, not cell factors. Careful control of antibiotics in cell culture is crucial for accurate extracellular vesicle (EV) research.
Area of Science:
- Microbiology
- Cell Biology
- Biotechnology
Background:
- Chronic wounds frequently harbor Staphylococcus aureus, necessitating novel antimicrobial and wound healing strategies.
- Extracellular vesicles (EVs) are a promising area for therapeutic development, but their isolation relies on conditioned medium (CM).
- Standardization of EV isolation techniques is increasing, yet upstream tissue culture methods for CM collection are less scrutinized.
Purpose of the Study:
- To investigate the antimicrobial properties of conditioned medium (CM) used for extracellular vesicle (EV) enrichment.
- To determine the source of antimicrobial activity observed in CM.
- To assess the impact of antibiotic carry-over on CM's antimicrobial potential.
Main Methods:
- Culturing cells to collect conditioned medium (CM).
- Testing CM for bacteriostatic effects against penicillin-sensitive and penicillin-resistant Staphylococcus aureus strains.
- Analyzing CM composition to identify antimicrobial factors, including residual antibiotics.
- Evaluating the effect of pre-washing cells and reduced antibiotic concentrations on CM antimicrobial activity.
Main Results:
- CM demonstrated bacteriostatic effects against penicillin-sensitive S. aureus but not penicillin-resistant strains.
- The observed antimicrobial activity was attributed to residual penicillin retained and released from tissue culture plastic, not cell-secreted factors.
- Pre-washing cells and using lower antibiotic concentrations in basal medium mitigated the antibiotic carry-over effect.
Conclusions:
- Residual antibiotics in conditioned medium can be mistaken for inherent antimicrobial properties of cell-secreted factors or extracellular vesicles.
- Controlling antibiotic usage in tissue culture is vital to prevent misleading results in antimicrobial and therapeutic evaluations.
- Accurate determination of CM's antimicrobial mechanisms is essential for validating future cell-based therapeutic applications, including those involving EVs.
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