Related Experiment Video
Updated: Sep 13, 2025

A Bioinformatics Pipeline for Investigating Molecular Evolution and Gene Expression using RNA-seq
Published on: May 28, 2021
The transcriptome of the olm provides insights into its evolution and gene expression
Susanne Holtze1, Defne Demirtürk2, Oliver Ohlenschläger3
1Department of Reproduction Management, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany. holtze@izw-berlin.de.
None:
The olm (Proteus anguinus), with a predicted maximum lifespan of more than 100 years, is the longest-lived amphibian, which in addition possesses a range of unique adaptations to its dark, subterranean cave habitat. To assess the underlying molecular signatures, we present the first comprehensive transcriptome of the olm. Our study provides gene expression data across six organs and comparative genomics analyses, accessible via an interactive web server: http://comp-pheno.de/olm . The data uncover significant organ-specific gene expression, with the brain showing the highest number of organ-specific expressed genes. Our findings reveal significantly more genes under strong negative selection than positive selection, particularly in brain-specific expressed genes. Processes under positive selection in the olm resemble those in other long-lived species.
Related Concept Videos
Gene Evolution - Fast or Slow?
Genome Size and the Evolution of New Genes
mRNA Stability and Gene Expression
Ribosome Profiling
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
Cell Specific Gene Expression
Bacterial Transcription
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:

