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Updated: Sep 12, 2025

Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors
Published on: May 9, 2025
Design, Synthesis, and Biological Activity of Amine-Type Cyclopentanepyridinone Derivatives as HIV‑1 Non-Nucleoside
Nancy Vanessa Castro-Perea1, Gibran Rodríguez-Vega2, Julio Cesar Abarca-Magaña3
1National Technological of Mexico/Tijuana Technological Institute, Center for Graduate and Research in Chemistry, Postal Box 1166, Tijuana, Baja California 22000, Mexico.
Novel amine-type cyclopentanepyridinone derivatives were synthesized as potential non-nucleoside reverse transcriptase inhibitors (NNRTIs) against HIV. Compound 9 showed potent anti-HIV activity and favorable binding interactions within the NNRTI binding pocket.
Area of Science:
- Medicinal Chemistry
- Virology
- Drug Discovery
Background:
- Non-nucleoside reverse transcriptase inhibitors (NNRTIs) for HIV often have poor pharmacological properties and face drug resistance.
- There is a continuous need for novel reverse transcriptase (RT) inhibitors to combat HIV infection.
Purpose of the Study:
- To synthesize and evaluate novel amine-type cyclopentanepyridinone derivatives as potential NNRTIs.
- To investigate the anti-HIV activity and binding mechanisms of these new compounds.
Main Methods:
- Synthesis of 20 novel amine-type cyclopentanepyridinone derivatives.
- Evaluation of anti-HIV activity (EC50) and cytotoxicity (CC50).
- Molecular docking and molecular dynamics (MD) simulations to assess binding interactions with HIV-1 RT.
Main Results:
- Compounds with alkyl and alkenyl chains at the C-4 position displayed anti-HIV activity at nanomolar to micromolar concentrations.
- Compound 9 demonstrated potent inhibition of HIV and wild-type (WT) HIV-1 RT (EC50 = 540 nM, IC50 = 33.89 μM) with low cytotoxicity (CC50 > 100 μM).
- Molecular modeling indicated favorable interactions with key residues in the NNRTI binding pocket (NNIBP) and stable hydrogen bond formation.
Conclusions:
- Amine-type cyclopentanepyridinone derivatives represent a promising class of novel NNRTIs.
- Compound 9 is a potent candidate for further development as an anti-HIV agent.
- The synthesized compounds effectively bind to the NNRTI binding pocket of HIV-1 RT.
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