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Updated: Sep 12, 2025

Methylated DNA Immunoprecipitation
Published on: January 2, 2009
RNA Epigenetics in Cancer: Current Knowledge and Therapeutic Implications
Shanhe Huang1,2, Zonglin Li1,2, Weilong Lin1,2
1Department of Urology Sun Yat-sen Memorial Hospital, Sun Yat-sen University Guangzhou China.
Abstract:
RNA epigenetics, also referred to as epitranscriptomics, has emerged as a critical regulatory layer in cancer biology, extending beyond the scope of traditional DNA and histone modifications. It encompasses a series of dynamic posttranscriptional processes-including RNA biosynthesis, splicing, transport, stability, degradation, translation, and chemical modifications-orchestrated by RNA-binding proteins (RBPs) and noncoding RNAs (ncRNAs). Collectively, these mechanisms influence mRNA fate, shape transcriptional output, and reprogram the tumor microenvironment. Importantly, both coding RNA and ncRNA are themselves subjected to epigenetic regulation, forming intricate feedback loops that contribute to oncogenesis, immune evasion, metastasis, and therapeutic resistance. In this review, we systematically synthesize the current understanding of RNA metabolism and RNA epigenetic modifications during tumor progression, with a particular focus on the roles of RBPs and RNA modifications. Furthermore, we highlight recent advances in RNA-based therapeutic strategies, including mRNA vaccines, antisense oligonucleotides, siRNAs, and circRNA scaffolds. These innovative approaches offer promising avenues for targeting transcriptionally active yet genomically "undruggable" cancer drivers. Together, our synthesis provides a comprehensive framework for understanding RNA epigenetics in tumor biology and lays the groundwork for precision oncology guided by transcriptome plasticity.
Insights
RNA epigenetics, or epitranscriptomics, regulates cancer by controlling RNA fate and function. Understanding these RNA modifications and RNA-binding proteins offers new therapeutic strategies for difficult-to-treat cancers.
Area of Science:
- Molecular Biology
- Cancer Biology
- Genetics
Background:
- RNA epigenetics (epitranscriptomics) is a key regulatory layer in cancer, distinct from DNA/histone modifications.
- It involves dynamic posttranscriptional RNA processes like modification, stability, and translation, orchestrated by RNA-binding proteins (RBPs) and noncoding RNAs (ncRNAs).
- These processes influence mRNA fate, gene expression, and the tumor microenvironment, contributing to cancer hallmarks.
Purpose of the Study:
- To systematically review RNA metabolism and epigenetic modifications in tumor progression.
- To focus on the roles of RBPs and RNA modifications in cancer.
- To highlight advances in RNA-based cancer therapeutics.
Main Methods:
- Literature review and synthesis of current research on RNA epigenetics in cancer.
- Analysis of the roles of RBPs and specific RNA modifications.
- Examination of emerging RNA-based therapeutic strategies.
Main Results:
- RNA epigenetic regulation forms feedback loops contributing to oncogenesis, immune evasion, metastasis, and drug resistance.
- RBPs and RNA modifications are central to controlling mRNA fate and tumor progression.
- RNA-based therapies like mRNA vaccines and oligonucleotides show promise against 'undruggable' cancer drivers.
Conclusions:
- RNA epigenetics provides a comprehensive framework for understanding cancer biology.
- Targeting transcriptome plasticity through RNA-based strategies is a promising direction for precision oncology.
- Further research into RNA metabolism and modifications can unlock novel cancer treatments.
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