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Genetics of progressive multifocal leukoencephalopathy: update on case reports with an inborn error of immunity and
Peggy S Eis1, Edward B Smith1, Shapour Jalilzadeh2
1Population Bio, Inc., New York, NY, United States.
Abstract:
A genetic predisposition to PML is now substantially supported by case reports of patients molecularly diagnosed with an inborn error of immunity (IEI) and progressive multifocal leukoencephalopathy (PML). Over the past 10 years, 4 IEI genes linked to PML has now grown to 26 as of 2025. Of these 26 genes believed to be causal of an IEI and PML, 24 (92%) are also linked with hemophagocytic lymphohistiocytosis/macrophage activation syndrome (HLH/MAS)-a severe hyper-inflammation syndrome associated with several IEI genes, most notably in 4 genes (PRF1, STX11, STXBP2, UNC13D) causing familial forms of the syndrome. Many HLH-linked genes are associated with life-threatening Epstein-Barr virus infections, which analogously suggests JC virus infection plus presence of a pathogenic variant in an HLH-linked IEI gene also increases risk of PML. PML also occurs as a serious adverse event for a subset of immunosuppressive therapies (e.g., natalizumab and rituximab) used to treat patients with immune disorders (e.g., multiple sclerosis and hematological malignancies). Recently, 4 PML risk variants were reported for use in a PML risk test to screen patients who are considering treatment with PML-linked therapies. Interestingly, of the 4 genes with a PML risk variant, 2 (LY9 and STXBP2) cause or are linked to HLH. The aim of our review is two-fold: (1) raise awareness among researchers and clinicians (e.g., neurologists, oncologists, and rheumatologists) that patient genetics are a key risk factor for PML, and (2) further reinforce the rationale for screening at-risk patients for PML risk variants before prescribing a PML-linked drug.
Insights
Genetic predisposition significantly increases the risk of progressive multifocal leukoencephalopathy (PML). Many genes linked to inborn errors of immunity (IEI) and PML also predispose individuals to hemophagocytic lymphohistiocytosis/macrophage activation syndrome (HLH/MAS).
Area of Science:
- Immunology
- Genetics
- Neurology
Background:
- Progressive multifocal leukoencephalopathy (PML) risk is increasingly linked to genetic factors, specifically inborn errors of immunity (IEI).
- The number of IEI genes associated with PML has risen significantly, with a high overlap (92%) between PML-linked IEI genes and those causing hemophagocytic lymphohistiocytosis/macrophage activation syndrome (HLH/MAS).
- JC virus infection in individuals with pathogenic variants in HLH-linked IEI genes may increase PML risk, mirroring associations between Epstein-Barr virus and HLH.
Purpose of the Study:
- To increase awareness among researchers and clinicians about the critical role of patient genetics in PML risk.
- To highlight the genetic overlap between PML and HLH/MAS, suggesting shared etiological pathways.
- To advocate for genetic screening of PML risk variants in patients considered for PML-associated therapies.
Main Methods:
- Review of case reports and genetic data linking inborn errors of immunity (IEI) to progressive multifocal leukoencephalopathy (PML).
- Analysis of gene associations between PML, HLH/MAS, and susceptibility to viral infections.
- Examination of recently identified PML risk variants and their correlation with HLH-linked genes.
Main Results:
- Over 26 IEI genes are now linked to PML, a substantial increase over the past decade.
- A majority (92%) of PML-associated IEI genes are also implicated in HLH/MAS.
- Two of the four identified PML risk variants are associated with HLH, underscoring the genetic connection.
Conclusions:
- Patient genetics represent a key risk factor for developing PML.
- Genetic screening for PML risk variants should be considered before initiating therapies associated with PML.
- Understanding the genetic basis of PML can inform risk stratification and preventative strategies.
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