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Published on: May 30, 2025
Inverted chimeric RNAi molecules synergistically cotarget MYC and KRAS in KRAS-driven cancers
Yogitha S Chareddy1,2,3, Hayden P Huggins2,3,4, Snehasudha S Sahoo2,3
1Curriculum in Genetics and Molecular Biology and.
Abstract:
Mutant KRAS has been implicated in driving a quarter of all cancer types. Although inhibition of the KRASG12C mutant protein has shown clinical promise, there is still a need for therapies that overcome resistance and target non-KRASG12C mutations. KRAS activates downstream MYC, which is also a difficult-to-drug oncoprotein. We have developed an "inverted" RNAi molecule with the passenger strand of a MYC-targeting siRNA fused to the guide strand of a KRAS-targeting siRNA. The chimeric molecule simultaneously inhibits KRAS and MYC, showing marked improvements in efficacy beyond the individual siRNA components. This effect is mediated by 5'-dT overhangs following endosomal metabolism. The synergistic RNAi activity led to a more than 10- to 40-fold improvement in inhibition of cancer viability in vitro. When conjugated to an EGFR-targeting ligand, the chimeric siRNA was delivered to and internalized by tumor cells. As compared with individual targeting siRNAs, the chimeric design resulted in considerably improved metabolic stability in tumors, enhanced silencing of both oncogenes, and reduced tumor progression in multiple cancer models. This inverted chimeric design establishes proof of concept for ligand-directed, dual silencing of KRAS and MYC in cancer and constitutes an innovative molecular strategy for cotargeting any two genes of interest, which has broad implications.
Insights
A novel chimeric RNAi molecule simultaneously targets KRAS and MYC oncogenes, overcoming cancer resistance. This dual-silencing strategy shows significant improvements in efficacy and tumor reduction.
Area of Science:
- Oncology
- Molecular Biology
- RNA Interference Therapeutics
Background:
- Mutant KRAS drives a significant portion of human cancers.
- Existing therapies targeting KRASG12C show promise but require broader strategies for resistance and other mutations.
- MYC is a key downstream oncogene activated by KRAS, presenting a challenging therapeutic target.
Purpose of the Study:
- To develop a novel therapeutic strategy for simultaneous inhibition of KRAS and MYC.
- To evaluate the efficacy of an "inverted" chimeric RNAi molecule targeting both oncogenes.
- To establish proof-of-concept for ligand-directed, dual-silencing of KRAS and MYC in cancer models.
Main Methods:
- Development of an "inverted" chimeric RNAi molecule fusing MYC-targeting siRNA and KRAS-targeting siRNA.
- In vitro assessment of synergistic RNAi activity and cancer cell viability inhibition.
- In vivo studies utilizing EGFR-ligand conjugated chimeric siRNA for tumor cell delivery and assessment of tumor progression.
Main Results:
- The chimeric molecule demonstrated synergistic RNAi activity, leading to >10-40 fold improvement in inhibiting cancer viability in vitro.
- Ligand-conjugated chimeric siRNA showed enhanced metabolic stability, improved oncogene silencing, and reduced tumor progression in vivo.
- The dual-targeting approach significantly outperformed individual siRNA components.
Conclusions:
- The "inverted" chimeric RNAi design provides a potent strategy for simultaneously silencing KRAS and MYC.
- Ligand-directed delivery enhances therapeutic efficacy and tumor targeting.
- This approach offers a versatile platform for co-targeting any two genes of interest in cancer therapy.
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