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Isolation of Next-Generation Gene Therapy Vectors through Engineering, Barcoding, and Screening of Adeno-Associated Virus AAV Capsid Variants
Published on: October 18, 2022
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Barrier Function of the Extracellular Matrix in AAV Gene Therapy
Yahya Cheema1, Devorah Cahn1,2, Sahana Kumar1
1Fischell Department of Bioengineering, University of Maryland, College Park, MD 20742, USA.
Biorxiv : the Preprint Server for Biology
|August 6, 2025
Summary
Adeno-associated virus (AAV) transport and gene delivery can be hindered by the extracellular matrix (ECM). Understanding AAV-ECM interactions is crucial for effective AAV gene therapy development.
Area of Science:
- Biomedical Engineering
- Gene Therapy
- Extracellular Matrix Biology
Background:
- The extracellular matrix (ECM) significantly influences the tissue microenvironment.
- ECM can impede adeno-associated virus (AAV) distribution, limiting therapeutic gene delivery to target organs.
Purpose of the Study:
- To investigate the impact of AAV serotype and ECM composition on AAV transport and gene delivery.
- To elucidate AAV-ECM interactions to overcome potential barriers in AAV gene therapy.
Main Methods:
- Fluorescently labeled AAV2, AAV6, and AAV8 vectors were used to visualize diffusion in tissue-specific decellularized ECM (dECM) hydrogels.
- AAV and nanoparticle diffusion were quantified using fluorescent microscopy and particle tracking.
- AAV transduction efficiency was assessed in dECM-incorporated 2D and 3D spheroid models.
Main Results:
- All tested AAV serotypes exhibited reduced diffusivity in ECM compared to nanoparticles.
- AAV2 showed the least diffusion reduction across different ECM types, unlike AAV6 and AAV8.
- AAV transduction was significantly diminished in both 2D and 3D dECM-incorporated models.
Conclusions:
- AAV binding to the ECM may reduce therapeutic efficacy in target tissues.
- The barrier properties of the ECM must be considered during the development of AAV-based gene therapies.

