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Label-Free Longitudinal Imaging of Single Cell Drug Response with a 3D-Printed Cell Culture Platform
Erin L Dunnington1, King Wai Chiu1, Brian S Wong1
1Department of Chemistry, University of Washington, Seattle, WA, 98195, USA.
Biorxiv : the Preprint Server for Biology
|August 6, 2025
Summary
Stimulated Raman scattering (SRS) microscopy enables label-free, live-cell imaging to reveal drug responses. A new 3D printed platform allows real-time monitoring of biochemical and morphological changes for accelerated drug discovery.
Area of Science:
- Biomedical imaging
- Chemical imaging
- Drug discovery
Background:
- Image-based phenotypic screening is crucial for preclinical drug discovery.
- Live-cell imaging captures dynamic cellular responses, offering advantages over static assays.
- Fluorescence microscopy has limitations in live-cell multiplexing and potential for phototoxicity.
Purpose of the Study:
- To develop a low-cost, 3D printed platform for live-cell imaging compatible with Stimulated Raman Scattering (SRS) microscopy.
- To enable real-time drug delivery and continuous monitoring of cellular changes.
- To showcase time-lapse SRS microscopy for mapping heterogeneous drug responses.
Main Methods:
- Development of a 3D printed cell culture platform for SRS microscopy.
- Implementation of real-time drug delivery and 24-hour time-lapse imaging.
- Establishment of a processing pipeline for extracting chemical and morphological features from SRS images.
- Utilizing multi-well perfusion parallelized with label-free chemical imaging.
Main Results:
- Demonstration of a low-cost, 3D printed platform enabling label-free, live-cell SRS microscopy.
- Successful real-time monitoring of biochemical and morphological changes with minimal photodamage.
- Mapping of heterogeneous, drug-induced single-cell responses over time.
- Identification of divergent cellular trajectories within populations.
Conclusions:
- Time-lapse SRS microscopy with the developed platform is a powerful tool for analyzing single-cell heterogeneity and drug responses.
- This approach accelerates phenotypic screening and offers a pathway toward personalized medicine.
- Label-free chemical imaging provides quantitative insights into dynamic cellular processes.

