Reusable Noncomplementary DNA-Based Neural Network

Neural network computation is a cornerstone of modern artificial intelligence, with electronic software-based approaches achieving widespread success due to their ability to enable continuous, iterative learning on the same platform. DNA-based neural networks, with their potential advantages in versatility, scalability, and energy efficiency, offer a promising alternative to traditional systems. However, despite significant advancements in pattern recognition and algorithm accuracy, current DNA-based neural networks, relying on the complementary pairing of DNA nucleobases, suffer from the nonreusability of their computing materials. This limitation not only raises operational costs but also restricts their capacity for implementing learning mechanisms. Here, we introduce an unprecedented noncomplementary DNA-based perceptron (NCP) computation strategy, marking the first successful demonstration of a reusable DNA-based neural network. We present a "tagging" strategy to facilitate the scaling-up of noncomplementary DNA-based neural network. We show that 4-bit molecular pattern recognition can be simply achieved through strand-displacement reactions between four input strands and four pairs of noncomplementary DNA duplexes in the NCP, with weighting values modulated by duplex concentrations. Furthermore, a noncomplementary "winner-take-all" module enables decision-making, as demonstrated in an "I Spy" game task. Most importantly, by utilizing removable input strands (lipid-oligonucleotide conjugates), our NCP-based neural network enables reliable multicycle computations, overcoming the critical reusability challenge in DNA-based neural network computation. This work pioneers reusability in DNA-based neural networks, offering a practical path to molecular computing systems with learning capabilities.