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A novel regularization approach for loss functions to reduce instance imbalance in biomedical image segmentation
Muhammad Aqib Javed1, Muhammad Khuram Shahzad1, Hafiz Syed Muhammad Bilal Ali1
1Faculty of Computing, School of Electrical Engineering and Computer Science, National University of Sciences and Technology, Islamabad, 44000, Pakistan.
Computational Biology and Chemistry
|August 6, 2025
Summary
This study introduces a novel dual-coefficient regularization method to improve biomedical image segmentation by addressing instance imbalance. The approach enhances existing loss functions, significantly improving accuracy and reducing false detections and missed instances.
Area of Science:
- Medical Imaging
- Computer Vision
- Machine Learning
Background:
- Biomedical image segmentation has grown significantly, but current methods struggle with imbalanced datasets.
- Existing loss functions like Blob Loss, Lesion-wise Loss, and Dice Loss have limitations, particularly with instance imbalance.
- Instance-wise loss and Center-of-Instance loss (ICI) were developed but suffer from unregulated labels and outputs, leading to low accuracy.
Purpose of the Study:
- To introduce a novel dual-coefficient regularization approach for loss functions in biomedical image segmentation.
- To address the challenge of instance imbalance more effectively than existing pixel-level or class-level weighting strategies.
- To enhance the performance of existing loss functions through regularization.
Main Methods:
- A novel dual-coefficient regularization approach was developed, modifying predicted outputs and labels before loss computation.
- This approach was applied to create enhanced loss functions: regularized instance-wise loss (RIW), regularized center of instance loss (RCI), and regularized pixel-wise loss (RPW).
- Experiments were conducted on the ATLAS R2.0 and BraTS'20 datasets.
Main Results:
- The proposed approach significantly improved existing loss functions: RIW (up to 69.16%), RCI (up to 16.58%), and RPW (67.82%).
- A substantial decrease in the false detection rate was observed, up to 97.78%.
- The number of missed instances was also reduced, demonstrating enhanced segmentation accuracy.
Conclusions:
- The dual-coefficient regularization approach effectively addresses instance imbalance in biomedical image segmentation.
- The enhanced loss functions (RIW, RCI, RPW) demonstrate superior performance compared to state-of-the-art methods.
- This method offers a promising solution for improving the accuracy and reliability of biomedical image segmentation.

