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Updated: May 11, 2026

Advanced Confocal Microscopy Techniques to Study Protein-protein Interactions and Kinetics at DNA Lesions
Published on: November 12, 2017
Calculation of DNA damage at different depths of proton SOBP based on a new method and its applications
Xianghui Kong1, Kaijin Yan1, Xinjie Wang1
1Department of Radiation Oncology, The First Affiliated Hospital of Soochow University, State Key Laboratory of Radiation Medicine and Protection, School of Radiation Medicine and Protection, Collaborative Innovation Center of Radiological Medicine of Jiangsu Higher Education Institutions, Soochow University, Suzhou 215123, People's Republic of China.
Abstract:
Objective.In examining the biological effects of proton radiation, DNA is the primary sensitive target. This study utilizes Monte Carlo simulations to efficiently calculate DNA damage yields at various proton depths to analyze the biological effects of protons and their variability on different scales.Approach.A new method, the 'Coefficient Method' is used to replace the complete chemical processes by adjusting parameters to obtain suitable values for simulating DNA damage yields at different spread-out Bragg peak (SOBP) depths of low-energy protons, and these parameters are then applied to high-energy proton simulations based on a mesh-type cell model. We computed two relative biological effectiveness (RBE) at two different scales:RBEmax(at 0 Gy per fraction) andRBEDSB(based on DNA damage yields).Main results. The results confirm the feasibility of the 'Coefficient Method,' with deviations inYDSBs(the yields of double-strand breaks (DSBs)) andYDSBc(the yields of complex DSBs) ranging from 0.60%-3.79% and 1.45%-4.1%, respectively, and a clear advantage in simulation efficiency. For high-energy protons,YSSBs(the yields of single-strand breaks) decreases with depth, whileYDSBsandYDSBcincrease. What's more, the differences in RBE across different scales are substantial. At 1 cm depth for 70_SOBP MeV protons,RBEmaxis 1.53 vsRBEDSBof 1.45; at the beam end,RBEmaxreaches 10.45 vsRBEDSBof 2.36. Mesh thickness has negligible impact onRBEmax.Significance.It is confirmed that using the 'Coefficient Method' to obtain DNA damage yields at different depths for high-energy protons is reliable. TheRBEDSBvalues based on this method show significant differences compared to the traditionalRBEmaxvalues. This indicates the importance of investigating the biological effects of proton radiation at the DNA scale and further emphasizes the significance of exploring the relationship between proton radiation quality and the target of interest.
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