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Updated: Sep 12, 2025

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Author Spotlight: A Non-Invasive Tool to Assess and Differentiate Fat Patterns in Liver Using 3D Dixon MRI
Published on: October 20, 2023
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Liver MRI proton density fat fraction inference from contrast enhanced CT images using deep learning: A
Md Nasir1, Yixi Xu1, Kyle Hasenstab2
1AI for Good Lab, Microsoft, Redmond, Washington, United States of America.
Plos One
|August 8, 2025
Summary
This study shows deep learning can estimate liver fat from CT scans, aiding early diagnosis of metabolic dysfunction-associated steatotic liver disease (MASLD). While not precise, it accurately categorizes lower fat grades, improving accessibility for MASLD assessment.
Area of Science:
- Radiology
- Artificial Intelligence
- Hepatology
Background:
- Metabolic dysfunction-associated steatotic liver disease (MASLD) is a prevalent global health issue.
- Accurate, noninvasive liver fat quantification is crucial for early diagnosis and management.
- Current gold standard, MRI Proton Density Fat Fraction (PDFF), faces accessibility and cost limitations.
Purpose of the Study:
- To explore the feasibility of inferring liver MRI-PDFF values from contrast-enhanced computed tomography (CECT) using deep learning.
- To develop and validate a deep neural network (DNN) for estimating liver fat content from CECT images.
- To assess the accuracy of DNN-predicted PDFF against MRI-PDFF ground truth.
Main Methods:
- Retrospective analysis of 94 living liver donor candidates with concurrent CECT and MRI-PDFF.
- A 3D U-Net deep neural network was trained using CECT as input and MRI-PDFF as output.
- Performance evaluated using Mean Absolute Error (MAE), Root Mean Squared Error (RMSE), and Kappa statistics for agreement.
Main Results:
- The DNN model achieved an MAE of 2.94 and RMSE of 4.27 when comparing predicted to reference MRI-PDFF medians.
- Substantial agreement (kappa = 0.75) was found between DNN-predicted and ground truth categorical steatosis grades.
- The model demonstrated robust categorical classification of lower-grade steatosis, outperforming prior methods.
Conclusions:
- Deep learning shows promise in estimating liver fat from CECT, offering a more accessible alternative to MRI-PDFF.
- While exact PDFF values were limited, categorical fat grade classification was reliable, especially for lower grades.
- This approach could potentially improve early MASLD diagnosis and patient care by leveraging readily available CECT data.
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