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Published on: May 15, 2019
Molecular Biophysics Database (MBDB) makes raw measurements findable and reusable.
Emil Dandanell Agerschou1, Terezie Prchalová1, Miroslav Šimek2
1Institute of Biotechnology of the Czech Academy of Sciences, Průmyslová 595, 252 50, Vestec, Czech Republic.
The Molecular Biophysics Database (MBDB) offers a new platform for storing and accessing raw experimental data in molecular biophysics. This initiative supports open science by making crucial research data more accessible and reusable.
Area of Science:
- Molecular Biophysics
- Biophysics
- Structural Biology
Background:
- Open science principles advocate for widespread and free access to research data.
- A lack of dedicated infrastructure hinders access to comprehensive experimental information in molecular biophysics, especially raw measurement data.
- Existing repositories do not adequately support the diverse data types generated by various biophysical methods.
Purpose of the Study:
- To introduce the Molecular Biophysics Database (MBDB) as a solution for storing and accessing raw measurement data in molecular biophysics.
- To provide a common and extensible framework for diverse biophysical data.
- To promote data reuse through comprehensive metadata compliant with FAIR principles.
Main Methods:
- Development of a common and extensible data framework for molecular biophysics.
- Implementation of data models and technologies to support raw measurement data storage.
- Integration of metadata capture aligned with FAIR data management principles.
Main Results:
- The MBDB has been established to house raw measurement data from multiple biophysical techniques.
- Currently supports bio-layer interferometry, isothermal titration calorimetry, surface plasmon resonance, and microscale thermophoresis.
- Future expansion to include additional biophysical methods is planned.
Conclusions:
- The MBDB addresses the critical need for accessible raw data repositories in molecular biophysics.
- It facilitates the principles of open science and enhances the integrity and utility of research data.
- The database provides a robust foundation for future advancements in molecular biophysics research and data sharing.
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