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A More Robust Approach to Multivariable Mendelian Randomization
Yinxiang Wu1, Hyunseung Kang2, Ting Ye1
1Department of Biostatistics, University of Washington, Seattle, Washington, U.S.A.
Abstract:
Multivariable Mendelian randomization (MVMR) uses genetic variants as instrumental variables to infer the direct effects of multiple exposures on an outcome. However, unlike univariable Mendelian randomization, MVMR often faces greater challenges with many weak instruments, which can lead to bias not necessarily toward zero and inflation of type I errors. In this work, we introduce a new asymptotic regime that allows exposures to have varying degrees of instrument strength, providing a more accurate theoretical framework for studying MVMR estimators. Under this regime, our analysis of the widely used multivariable inverse-variance weighted method shows that it is often biased and tends to produce misleadingly narrow confidence intervals in the presence of many weak instruments. To address this, we propose a simple, closed-form modification to the multivariable inverse-variance weighted estimator to reduce bias from weak instruments, and additionally introduce a novel spectral regularization technique to improve finite-sample performance. We show that the resulting spectral-regularized estimator remains consistent and asymptotically normal under many weak instruments. Through simulations and real data applications, we demonstrate that our proposed estimator and asymptotic framework can enhance the robustness of MVMR analyses.
Insights
Multivariable Mendelian randomization (MVMR) can be biased with weak instruments. This study introduces a new framework and a spectral-regularized estimator to improve accuracy and robustness in MVMR analyses.
Area of Science:
- Statistical Genetics
- Epidemiology
- Bioinformatics
Background:
- Multivariable Mendelian randomization (MVMR) infers causal effects of multiple exposures on an outcome using genetic variants.
- MVMR faces challenges with weak instruments, leading to bias and inflated Type I errors, unlike univariable Mendelian randomization.
Purpose of the Study:
- To develop a more accurate theoretical framework for MVMR estimators under varying instrument strengths.
- To propose a novel estimator that mitigates bias and improves finite-sample performance in the presence of many weak instruments.
Main Methods:
- Introduction of a new asymptotic regime accommodating varying instrument strengths.
- Analysis of the multivariable inverse-variance weighted method under the new regime.
- Development of a closed-form modification and a spectral regularization technique for MVMR estimators.
Main Results:
- The standard multivariable inverse-variance weighted method shows bias and narrow confidence intervals with many weak instruments.
- The proposed spectral-regularized estimator is consistent and asymptotically normal under many weak instruments.
- Simulations and real data applications confirm enhanced robustness of the proposed methods.
Conclusions:
- The novel asymptotic framework provides a more accurate theoretical basis for MVMR.
- The proposed spectral-regularized estimator significantly improves the reliability of MVMR analyses with weak instruments.
- This work enhances the robustness and accuracy of causal inference using multivariable Mendelian randomization.
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