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Recent developments in omics studies and artificial intelligence in depression and suicide
Qingzhong Wang1, Yogesh Dwivedi2
1Department of Psychiatry and Behavioral Neurobiology, University of Alabama at Birmingham, Birmingham, AL, USA.
Abstract:
Major depressive disorder (MDD) is the most prevalent and severe form of mental illness and is significantly linked to suicide. At present, addressing the treatment and prevention of depression and suicide poses significant challenges, largely due to the remaining uncertainties surrounding their pathogenesis. Thus, there is an urgent need to find new molecular pathways, as well as effective biomarkers and drug targets, to provide effective diagnosis, prognosis, and treatments for depression and suicide. Recent advancements in high-throughput sequencing technology and whole-genome analysis have enabled the collection of extensive omics data from blood samples, human autopsy brain tissue, and various animal models. This data captures significant molecular-level changes, including alterations in gene transcripts, epigenomes, and proteins, effectively reflecting the biological state of the disease. This review provides a systematic overview of advancements in transcriptomics, non-coding RNA, and AI related to depression and suicide. It discusses new research approaches, such as spatial transcriptomics, addresses challenges connected to various research materials and methodologies, and proposes avenues for future studies.
Insights
This review explores transcriptomics, non-coding RNA, and AI for understanding major depressive disorder (MDD) and suicide pathogenesis. It highlights new molecular pathways and biomarkers for improved diagnosis and treatment.
Area of Science:
- Neuroscience
- Genomics
- Computational Biology
Background:
- Major depressive disorder (MDD) is a leading cause of disability and is strongly linked to suicide.
- Current understanding of MDD and suicide pathogenesis remains incomplete, hindering effective treatment and prevention.
- There is a critical need for novel molecular pathways, biomarkers, and drug targets for depression and suicide.
Purpose of the Study:
- To provide a systematic overview of recent advancements in transcriptomics, non-coding RNA, and artificial intelligence (AI) in depression and suicide research.
- To discuss emerging research approaches, including spatial transcriptomics.
- To identify challenges and propose future research directions in the field.
Main Methods:
- Review of high-throughput sequencing technologies and whole-genome analysis.
- Analysis of omics data from blood, brain tissue, and animal models.
- Systematic literature review focusing on transcriptomics, non-coding RNA, and AI applications.
Main Results:
- Omics data reveal significant molecular changes, including gene transcripts, epigenomes, and proteins, reflecting disease states.
- Advancements in transcriptomics and non-coding RNA offer insights into MDD and suicide.
- AI is increasingly utilized for analyzing complex biological data in mental health research.
Conclusions:
- Transcriptomics, non-coding RNA, and AI are powerful tools for elucidating the molecular underpinnings of depression and suicide.
- New research methodologies like spatial transcriptomics hold promise for detailed molecular mapping.
- Addressing research challenges and pursuing future studies are crucial for developing effective interventions for MDD and suicide.
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