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Updated: Sep 11, 2025

Assessing Cellular Target Engagement by SHP2 PTPN11 Phosphatase Inhibitors
Published on: July 17, 2020
A Hotspot Phosphorylation Site on SHP2 Drives Oncoprotein Activation and Drug Resistance
Neil Vasan1,2,3, Prashath Karunaraj1, Remkes Scheele4
1Herbert Irving Comprehensive Cancer Center, Columbia University Irving Medical Center, New York, NY, USA.
Abstract:
SHP2 is a phosphatase and a critical mediator of receptor tyrosine kinase (RTK)-driven RAS/mitogen-activated protein kinase (MAPK) signaling. Despite promising preclinical data, SHP2 inhibitors have shown minimal clinical efficacy, with no defined clinical mechanisms of primary resistance. Here, we elucidate phosphorylation of SHP2 at tyrosine 62 (pY62) as a hotspot phosphorylation site in the proteome and RTK-driven tumor types in patients. We demonstrate that SRC family kinases directly phosphorylate SHP2 at Y62, downstream of but not directly phosphorylated by RTKs. Using biochemical and biophysical analyses, we show that SHP2 Y62D enforces an open, active conformation, resulting in constitutive phosphatase activation that is sufficient to activate MAPK signaling and confer resistance to allosteric SHP2 inhibitors. These findings establish that SHP2 pY62 is a phosphorylation hotspot phenocopying mutational activation, a mechanism of primary resistance to SHP2 inhibitors, and a cancer drug target distinct from wildtype SHP2.
Insights
Phosphorylation of SHP2 at tyrosine 62 (pY62) by SRC family kinases causes resistance to SHP2 inhibitors by activating MAPK signaling. This pY62 site represents a novel cancer drug target distinct from wildtype SHP2.
Area of Science:
- Oncology
- Molecular Biology
- Biochemistry
Background:
- SHP2 phosphatase is crucial for receptor tyrosine kinase (RTK)-driven RAS/MAPK signaling.
- SHP2 inhibitors show limited clinical efficacy, with resistance mechanisms unclear.
Purpose of the Study:
- To identify mechanisms of primary resistance to SHP2 inhibitors.
- To investigate the role of SHP2 phosphorylation in cancer signaling and drug resistance.
Main Methods:
- Proteomic analysis to identify SHP2 phosphorylation hotspots.
- Biochemical assays to determine kinase activity and protein interactions.
- Biophysical analyses to characterize SHP2 conformation and activation.
Main Results:
- Phosphorylation of SHP2 at tyrosine 62 (pY62) is a hotspot in RTK-driven tumors.
- SRC family kinases directly phosphorylate SHP2 at Y62, independent of direct RTK phosphorylation.
- SHP2 Y62D mutation mimics constitutive activation, leading to MAPK pathway activation and resistance to allosteric SHP2 inhibitors.
Conclusions:
- SHP2 pY62 phosphorylation is a mechanism of primary resistance to SHP2 inhibitors, phenocopying mutational activation.
- Targeting SHP2 pY62 offers a distinct therapeutic strategy separate from wildtype SHP2 inhibition.
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