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Updated: Sep 11, 2025

Whole-Brain 3D Activation and Functional Connectivity Mapping in Mice using Transcranial Functional Ultrasound Imaging
Published on: February 24, 2021
3D Transcranial Dynamic Ultrasound Localization Microscopy in the Mouse Brain Using a Row-Column Array
Objective:
To assess the role of brain hemodynamics in neurodegenerative diseases, current imaging technologies remain insufficient due to limitations in spatial or temporal resolution for quantitative mapping of pulsatile flow in the whole brain. This study aims to demonstrate the feasibility of 3D transcranial Dynamic Ultrasound Localization Microscopy (DULM) for spatiotemporal blood flow measurements in the brain, addressing limitations of 2D imaging for velocity estimation within the 3D complex vascularized structures.
Methods:
We used a (128+128)-element, 12 MHz Row-Column Array (RCA) to perform transcranial DULM imaging in anesthetized mice (n = 7 in total). The RCA setup allows for reduced element count while maintaining a large field of view and high frame rate compared to matrix arrays. Transcranial images were acquired at a 750-Hz volume rate using an optimized microbubble concentration and a sequence of 42 tilted plane waves. Microbubbles were localized and tracked, enabling super-resolved dynamic density and velocity maps of the 3D brain vascular network.
Results:
Pulsatile flows were observed with 3D DULM in 7 mice. The segmentation of cortical vessels indicated that pulsatility in arteries was significantly higher than in veins, consistent across all mice and aligning with findings in existing literature.
Conclusion:
This study demonstrates for the first time the feasibility and reproducibility of obtaining high spatiotemporal resolution images of mouse brain vasculature using transcranial DULM with a RCA.
Significance:
This work highlights the potential of RCA 3D DULM for non-invasive cerebral hemodynamics studies, it might enable comprehensive vascular imaging suitable for research in early-stage neurodegenerative diseases.
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