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Updated: Jul 28, 2026

Characterization and Isolation of Mouse Primary Microglia by Density Gradient Centrifugation
Published on: February 16, 2018
Single-cell transcriptome analysis reveals dysregulation of microglial iron homeostasis in temporal lobe epilepsy
Zihua He1, Shengyi Liu1, Wenyan Shi1
1Department of Neurology, West China Hospital, Sichuan University, Chengdu, China.
Abstract:
Temporal lobe epilepsy (TLE) is the most common and drug-resistant type of epilepsy with an unknown mechanism. Abnormal accumulation of iron and lipid peroxides in the brain of TLE patients has been demonstrated. In this study, we investigated the role of microglia in iron metabolism and neuroinflammation by systematically analyzing single-cell/single-nucleus RNA sequencing data from TLE patients. Our results showed that cells associated with TLE phenotype were significantly increased in the ferroptosis gene set score and positive expression of ACSL4 and 4-HNE was observed by immunohistochemistry in brain tissues of TLE patients. Compared to the control group, microglia in the TLE group exhibited heightened metabolic activity in iron accumulation, ferritin synthesis, and oxidative damage, manifesting an inflammation-related phenotype and secreting multiple inflammatory factors. Furthermore, we discovered a unique microglial phenotype characterized by iron accumulation and neuroinflammation, resembling microglia associated with Alzheimer's disease. The abundance of these microglial cells showed significant differences between TLE patients with high and low seizure frequencies and correlated positively with seizure frequency. Gene regulatory network analysis further revealed an enrichment of inflammation and oxidative stress-related transcription factors in these cells. Additionally, we identified a TLE-related gene co-expression module whose transcriptional characterization highly correlate with these distinct microglia. Multiplex immunohistochemistry validated the expression of these cellular marker genes in brain tissues of TLE patients. In summary, these findings underscore the critical role of microglial dysregulation in iron metabolism and neuroinflammation in the pathogenesis of TLE. By identifying a specific microglial phenotype, our research suggests a potential target for developing new therapeutic strategies for TLE.
Insights
Microglia play a key role in temporal lobe epilepsy (TLE) pathogenesis by dysregulating iron metabolism and causing neuroinflammation. Identifying specific microglial phenotypes offers potential therapeutic targets for drug-resistant epilepsy.
Area of Science:
- Neuroscience
- Immunology
- Genetics
Background:
- Temporal lobe epilepsy (TLE) is the most common and drug-resistant epilepsy type with an unclear mechanism.
- Abnormal iron and lipid peroxide accumulation is observed in TLE patient brains.
Purpose of the Study:
- To investigate the role of microglia in iron metabolism and neuroinflammation in TLE.
- To identify specific microglial phenotypes associated with TLE pathogenesis.
Main Methods:
- Analysis of single-cell/single-nucleus RNA sequencing data from TLE patients.
- Immunohistochemistry and multiplex immunohistochemistry on brain tissues.
- Gene regulatory network analysis.
Main Results:
- TLE-associated cells showed increased ferroptosis gene set scores.
- Microglia in TLE patients exhibited heightened iron accumulation, ferritin synthesis, and oxidative damage, with an inflammatory phenotype.
- A unique microglial phenotype, similar to Alzheimer's disease-associated microglia, was identified and correlated with seizure frequency.
Conclusions:
- Microglial dysregulation in iron metabolism and neuroinflammation is critical in TLE pathogenesis.
- The identified TLE-related microglial phenotype represents a potential therapeutic target for epilepsy.
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