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Updated: Sep 11, 2025

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T and B Cell Receptor Immune Repertoire Analysis using Next-generation Sequencing
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Comprehensive Receptor Repertoire and Functional Analysis of Peripheral NK Cells in Soft Tissue Sarcoma Patients
Luana Madalena Sousa1,2, Jani-Sofia Almeida1,2,3,4,5,6, Tânia Fortes-Andrade1
1Laboratory of Immunology and Oncology, Center for Neuroscience and Cell Biology (CNC), University of Coimbra, 3004-504 Coimbra, Portugal.
Cancers
|August 14, 2025
Summary
Soft tissue sarcoma patients show reduced natural killer (NK) cell function, including impaired degranulation and IFNγ production. This suggests a shift towards a less cytotoxic NK cell phenotype in these patients.
Area of Science:
- Immunology
- Oncology
- Cancer Research
Background:
- Soft tissue sarcomas (STSs) are rare mesenchymal tumors with poor therapeutic response, especially in advanced stages.
- STSs were traditionally viewed as 'cold' tumors with low immune infiltration, but recent studies suggest a role for the immune system.
- Previous research indicated impaired natural killer (NK) cell activity in STS patients.
Purpose of the Study:
- To conduct an in-depth characterization of peripheral NK cells in STS patients.
- To further investigate the functional status and receptor expression of NK cells in the context of STS.
Main Methods:
- Analysis of peripheral blood samples from STS patients and healthy donors.
- Assessment of NK cell degranulation, interferon-gamma (IFNγ) production, and receptor repertoire.
- Utilized Principal Component Analysis (PCA) and Receiver Operating Characteristic (ROC) curve analysis for marker identification.
Main Results:
- STS patients displayed significantly reduced NK cell degranulation and IFNγ production compared to healthy controls.
- Dysregulated expression of activating and inhibitory NK cell receptors was observed in STS patients.
- CD27 and NKp44 were identified as key markers distinguishing STS patients, with increased CD27 correlating with reduced NK cell function.
Conclusions:
- STS patients exhibit impaired NK cell function, characterized by reduced cytotoxicity and altered receptor expression.
- A shift towards a more regulatory NK cell phenotype, indicated by increased CD27 expression, was observed in STS.
- CD27 and NKp44 show potential as biomarkers for distinguishing STS patients based on NK cell profiles.

