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Updated: Sep 11, 2025
A Data-Driven Approach to Quantifying Immune States in Sepsis
Published on: February 7, 2025
Multi-Omics Analysis Identifies Immune Regulatory Networks in Sepsis-Associated Liver Injury: Experimental Validation
Yiyu Hong1, Qiutong Chen1, Hua Xie1
1Department of Emergency, Zhujiang Hospital, Southern Medical University, Guangzhou, People's Republic of China.
Purpose:
Sepsis-induced liver injury (SILI) significantly contributes to mortality, yet its underlying immune mechanisms remain poorly understood. This study aimed to identify key immune-related genes (IRGs) driving T cell-mediated responses in SILI and evaluate their diagnostic potential.
Methods:
Cecal ligation and puncture (CLP) was performed to establish a murine sepsis model (n=7/group), with sham-operated controls. Serum IL-1β and lactate levels were quantified via ELISA. Public transcriptomic datasets (GSE26440, GSE26378, GSE25504, GSE28750; 180 sepsis vs 53 controls) were analyzed to identify differentially expressed IRGs (DEIRGs). Functional enrichment (GO/KEGG), protein-protein interaction (PPI) networks, and single-cell RNA sequencing (scRNA-seq) were integrated to prioritize T cell-associated genes. Flow cytometry assessed immune cell subsets (CD3+ T cells, CD19+ B cells, NK1.1+ NK cells, F4/80+ macrophages) in murine blood. Liver histopathology (HE staining) and cytokine expression (IL-1β/TNF-α; IHC) were evaluated.
Results:
CLP mice exhibited elevated IL-1β (P<0.01) and lactate (P<0.01), confirming metabolic dysfunction and inflammation. Bioinformatics analysis identified 19 DEIRGs, with PPI networks implicating immune regulation (PPI enrichment p=3.35×10-6). Flow cytometry confirmed T cell dominance (65.87% vs 63.85% in controls). scRNA-seq revealed four T cell-linked hub genes (FCER1G, IL2RB, PTGDR, XCL1). Protein-protein interaction (PPI) network analysis demonstrated that these genes form a synergistic regulatory network involving NF-κB, JAK-STAT, and other key pathways, with notable features including the IL2RB-XCL1 positive feedback loop and the opposing effects of PTGDR isoforms (DP1/DP2). Histopathology showed hepatic necrosis and inflammatory infiltration, correlating with upregulated IL-1β/TNF-α (IHC, P<0.05).
Conclusion:
FCER1G, IL2RB, PTGDR, and XCL1 are novel T cell-related biomarkers of SILI, offering potential therapeutic targets. The study bridges bioinformatics predictions with experimental validation, advancing understanding of immune dysregulation in sepsis.
