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Mitigating Catastrophic Forgetting in Molecular Property Prediction via Refresh Learning and Pareto Optimization
IEEE Transactions on Computational Biology and Bioinformatics
|August 14, 2025
Summary
This study introduces MTL-PORL, a novel Continual Learning (CL) framework for Large Language Models (LLMs) that prevents catastrophic forgetting in molecular property prediction. The method enhances knowledge retention and adaptation without prior data, improving sequential learning performance.
Area of Science:
- Artificial Intelligence
- Machine Learning
- Computational Chemistry
Background:
- Continual Learning (CL) is crucial for Large Language Models (LLMs) to adapt to new data without forgetting, especially in dynamic fields like Molecular Property Prediction (MP).
- LLMs often suffer from Catastrophic Forgetting (CF), where new learning erodes prior knowledge, particularly with shifting data distributions in chemical, genomic, and proteomic datasets.
- Existing replay-based CL methods use memory buffers but neglect inter-episode relationships, leading to suboptimal performance on previously encountered data.
Purpose of the Study:
- To develop a novel Continual Learning framework that mitigates Catastrophic Forgetting in Large Language Models for Molecular Property Prediction.
- To propose a unified hierarchical gradient aggregation framework integrating Multi-task Learning (MTL) and Refresh Learning (RL) principles.
- To enhance the stability-plasticity trade-off in sequential learning for LLMs.
Main Methods:
- A new Multi-task Learning framework, MTL-PORL (Multi-task Learner-Pareto Optimized Refresh Learning), was developed using the ChemBERTa model.
- The framework incorporates Refresh Learning (RL), inspired by neuroscience, which discards outdated information to improve retention and new learning.
- Pareto Optimization (PO) and a hyper-gradient approach are employed to unlearn and relearn current data, enhancing existing CL methods as a plug-in.
Main Results:
- MTL-PORL achieved high Anytime Average Accuracy (91.63%-94.89%) and Test Accuracy (92.48%-96.86%) across BBBP, bitter, and sweet datasets.
- The model demonstrated a low Forgetting Measure (-0.0048 to -0.0063), indicating effective knowledge retention.
- Empirical analysis showed significant improvements in sequential learning compared to existing methods, effectively addressing the stability-plasticity dilemma.
Conclusions:
- MTL-PORL offers a significant advancement in Continual Learning for LLMs, particularly for Molecular Property Prediction tasks.
- The proposed framework effectively combats Catastrophic Forgetting and improves performance on dynamic datasets.
- The Refresh Learning approach, combined with Pareto Optimization, provides a flexible and effective solution for enhancing sequential learning in LLMs.
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