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Updated: May 1, 2026

Internalization and Observation of Fluorescent Biomolecules in Living Microorganisms via Electroporation
Published on: February 8, 2015
Recent advances in organic molecule fluorescent probes for microbial imaging
Kunyi Wang1, Zixuan Zhang1, Xuefan Guo1
1State Key Laboratory of Chemical Resource Engineering, College of Chemistry, Beijing University of Chemical Technology, Beijing, 100029, China. wangzhuo77@mail.buct.edu.cn.
Abstract:
Microorganisms play a crucial role in human life and production. However, certain pathogenic microorganisms, such as bacteria, viruses, and fungi, can cause diseases like pneumonia, meningitis, and influenza, potentially leading to global public health crises. Fluorescence imaging has become a key tool for microbial detection due to its high specificity, sensitivity, and operational convenience. This review summarizes recent advances in microbial imaging studies based on organic small-molecule fluorescent probes. It focuses on the design strategies of various fluorophores, such as AIE, BODIPY, rhodamine, and fluorescein, and their application in imaging bacteria, fungi, and viruses. By targeting microbial-specific biomarkers, such as cell wall components, enzymes, or nucleic acid structures, these probes achieve high-selectivity imaging. These probes are applied in the detection of drug-resistant bacteria, biofilm research, and the development of anti-infective drugs. Additionally, the integration of multi-probe arrays with artificial intelligence opens new avenues for rapid microbial classification. This review discusses the principles of probe design, imaging mechanisms, and challenges, while also exploring their potential in clinical diagnostics and biological research.
Insights
Organic fluorescent probes offer sensitive and specific detection of pathogenic microorganisms like bacteria, viruses, and fungi. These advanced imaging tools are vital for diagnosing infections and developing new antimicrobial therapies.
Area of Science:
- Microbiology
- Chemical Biology
- Medical Imaging
Background:
- Pathogenic microorganisms pose significant global health risks, necessitating advanced detection methods.
- Fluorescence imaging provides high specificity and sensitivity for microbial identification.
- Organic small-molecule fluorescent probes represent a key advancement in microbial imaging.
Purpose of the Study:
- To review recent progress in microbial imaging utilizing organic small-molecule fluorescent probes.
- To highlight design strategies for various fluorophores (e.g., AIE, BODIPY, rhodamine, fluorescein).
- To discuss applications in detecting bacteria, fungi, and viruses, including drug-resistant strains and biofilms.
Main Methods:
- Review of literature on organic small-molecule fluorescent probes for microbial imaging.
- Analysis of probe design principles targeting microbial-specific biomarkers (cell walls, enzymes, nucleic acids).
- Examination of imaging mechanisms and applications in various research and diagnostic contexts.
Main Results:
- Various fluorophores (AIE, BODIPY, rhodamine, fluorescein) are effectively employed for microbial imaging.
- Probes targeting specific biomarkers enable high-selectivity imaging of bacteria, fungi, and viruses.
- Applications include detecting drug-resistant bacteria, studying biofilms, and aiding anti-infective drug development.
Conclusions:
- Organic small-molecule fluorescent probes are powerful tools for microbial detection and research.
- Integration with artificial intelligence offers potential for rapid microbial classification.
- These probes hold significant promise for clinical diagnostics and advancing biological research.
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