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Updated: Sep 11, 2025

Selecting Multiple Biomarker Subsets with Similarly Effective Binary Classification Performances
Published on: October 11, 2018
Biomarker Combination Based on the Youden Index With and Without Gold Standard.
Ao Sun1, Yanting Li2, Xiao-Hua Zhou3
1Center of Data Science, Peking University, Beijing, China.
This study introduces a novel two-stage method to optimally combine multiple diagnostic biomarkers and determine a cutoff value, improving disease classification accuracy even with imperfect reference standards.
Area of Science:
- Biostatistics
- Medical Diagnostics
- Bioinformatics
Background:
- Clinical practice often involves multiple biomarkers for disease diagnosis.
- Combining biomarkers can enhance diagnostic accuracy.
- Existing methods for biomarker combination have limitations, such as assuming a perfect gold standard or specific data distributions.
Purpose of the Study:
- To propose a two-stage method for optimal linear combination and cutoff value determination of multiple biomarkers.
- To improve diagnostic accuracy in practical settings where reference tests may be imperfect.
- To develop a robust method applicable to various diagnostic scenarios.
Main Methods:
- A two-stage approach is proposed: first, maximizing an approximated empirical area under the ROC curve (AUC) to estimate optimal linear coefficients.
- Second, maximizing the empirical Youden index to determine the optimal cutoff point for classification.
- The method is grounded in the semiparametric single index model.
Main Results:
- The proposed estimators for linear coefficients, cutoff point, and Youden index are shown to be consistent under regularity conditions.
- The method demonstrates applicability even when the reference standard is imperfect.
- Performance was validated through simulations and application to a Chinese medicine diagnostic scale.
Conclusions:
- The developed two-stage method provides a robust approach for combining multiple biomarkers and establishing optimal cutoff values.
- This method enhances diagnostic accuracy and is practical for real-world clinical settings, including those with imperfect reference standards.
- The approach is versatile and demonstrated effective in a real-world application for developing a diagnostic scale.
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