Related Experiment Video
Updated: Sep 10, 2025

Single-Molecule Fluorescence Visualization of DNA Polymerase Dynamics at G-Quadruplexes
Published on: April 4, 2025
G-quadruplex stabilization induces DNA breaks in pericentromeric repetitive DNA sequences in B lymphocytes
Irina Waisertreiger1, Kalkidan Ayele1, Mehad Hilal Elshaikh1
1Department of Microbiology and Molecular Genetics, University of California Davis, Davis, CA 95616.
DNA G-quadruplex structures can cause replication stress and genome instability. G4-stabilizing drugs like pyridostatin show therapeutic potential by selectively targeting cancer cells, inducing DNA damage and suppressing proliferation.
Area of Science:
- Molecular Biology
- Genetics
- Cancer Research
Background:
- DNA secondary G-quadruplex (G4) structures can impede DNA replication.
- Replication stress due to G4 processing defects is linked to B cell cancers and premalignant cells.
- Genome instability and chromosome rearrangements are hallmarks of cancer, particularly B cell malignancies.
Purpose of the Study:
- To investigate the impact of G4-stabilizing ligands on genome instability in primary and malignant B cells.
- To assess the differential response of primary versus malignant B cells to G4 stabilization.
Main Methods:
- Treatment of mouse primary B cells and CH12 lymphoma cells with pyridostatin (PDS).
- Analysis of DNA damage, chromosome breaks, and rearrangements in treated cells.
- Evaluation of cell cycle progression (G2/M arrest) and ploidy changes (tetraploidy).
Main Results:
- Pyridostatin induced DNA breaks and rearrangements in ribosomal DNA and pericentromeric regions in both primary and malignant B cells.
- Primary B cells exhibited high levels of tetraploid metaphase cells and dicentric chromosomes after PDS treatment.
- Malignant CH12 cells activated G2/M checkpoints, preventing tetraploidy and extensive damage seen in primary cells.
Conclusions:
- Primary and malignant B cells exhibit distinct responses to G4-stabilizing compounds.
- Pyridostatin causes significant genome instability, with malignant B cells showing a more robust checkpoint-mediated resistance.
- G4-stabilizing drugs hold therapeutic promise for selectively targeting B cell tumor growth by exploiting differential cellular responses.
Related Concept Videos
Fixing Double-strand Breaks
Homologous Recombination
Translesion DNA Polymerases
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
Long-patch Base Excision Repair
Restarting Stalled Replication Forks
Single-Strand DNA Binding Proteins

