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Updated: Sep 10, 2025

Exploring the Root Microbiome: Extracting Bacterial Community Data from the Soil, Rhizosphere, and Root Endosphere
Published on: May 2, 2018
The soil-plant-human gut microbiome axis into perspective.
Haikun Ma1,2, Deborah Cornadó3, Jos M Raaijmakers4,5
1State Key Laboratory of Medicinal Chemical Biology, Key Laboratory of Molecular Microbiology and Technology of the Ministry of Education, Department of Microbiology, College of Life Sciences, Nankai University, Tianjin, China. mahaikun@nankai.edu.cn.
The soil-plant-gut microbiome axis reveals a shared microbial continuum. This perspective explores microbial movement and co-evolution, impacting ecosystem and human health.
Area of Science:
- Microbiology
- Ecology
- Human Health
Background:
- Microbiomes in soil, plants, and animal guts are crucial for life processes.
- A shared microbial reservoir connecting these environments is suggested but lacks strong evidence.
- The concept of a soil-plant-gut microbiome axis requires further investigation.
Purpose of the Study:
- To explore the potential continuum and diversification of microbes along the soil-plant-gut axis.
- To identify specific microorganisms that can transfer between soil, plants, and the human gut.
- To propose a framework for understanding microbiome interactions and co-evolution.
Main Methods:
- This is a perspective piece, not an experimental study.
- It synthesizes existing knowledge and proposes a conceptual framework.
- It highlights potential microbial pathways and interactions.
Main Results:
- The study proposes a conceptual framework for the soil-plant-gut microbiome axis.
- It identifies the potential for microbial transfer and co-evolution across these environments.
- It suggests external factors can influence these interconnections.
Conclusions:
- A soil-plant-gut microbiome axis likely exists, with microbes potentially transferring between these niches.
- Understanding these interactions is key to improving ecosystem and human health.
- Further research is needed to elucidate the mechanisms and implications of this axis.
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