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Updated: Sep 10, 2025

Reconstitution of Msp1 Extraction Activity with Fully Purified Components
Published on: August 10, 2021
Lipid bilayer properties govern substrate engagement and extraction by the AAA+ ATPase Msp1
Heidi L Fresenius1, Brian Acquaviva2, Deepika Gaur3
1Department of Chemistry & Biochemistry, Previously at University of Toledo, Toledo, Ohio, USA.
Abstract:
An essential aspect of protein quality control is enzymatic removal of membrane proteins from the lipid bilayer. Failures in this critical cellular process are associated with neurodegenerative diseases and cancer. Msp1 is a AAA+ (ATPases associated with diverse cellular activities) ATPase that removes mistargeted membrane proteins from the outer mitochondrial membrane. How Msp1 selectively recognizes and extracts substrates within the complex outer mitochondrial membrane ecosystem, and how the lipid bilayer impacts these processes are unknown. Here, we describe the development of a fully defined, rapid, and quantitative extraction assay that retains physiological substrate selectivity. Using this new assay, we systematically modified both the model substrate and the lipid environment to demonstrate that Msp1 can recognize substrates by a hydrophobic mismatch between the substrate transmembrane domain and the lipid bilayer. We further demonstrate that the rate-limiting step in Msp1 activity is extraction of the transmembrane domain from the lipid bilayer. Together, these results provide foundational insights into how the lipid bilayer influences AAA+ mediated membrane protein extraction.
Insights
Msp1, an ATPase, removes faulty membrane proteins from mitochondria. It recognizes substrates via hydrophobic mismatch with the lipid bilayer, with TMD extraction being the rate-limiting step in this essential protein quality control process.
Area of Science:
- Cellular Biology
- Biochemistry
- Membrane Protein Biology
Background:
- Protein quality control is vital for cellular health, involving the removal of aberrant proteins.
- Failures in membrane protein removal are linked to diseases like cancer and neurodegeneration.
- Msp1 (ATPases Associated with diverse cellular Activities) is an ATPase crucial for removing mistargeted proteins from the outer mitochondrial membrane.
Purpose of the Study:
- To elucidate the mechanism by which Msp1 recognizes and extracts substrates from the outer mitochondrial membrane.
- To investigate the impact of the lipid bilayer environment on Msp1-mediated membrane protein extraction.
Main Methods:
- Development of a novel, quantitative, and rapid in vitro assay for Msp1 extraction.
- Systematic modification of model substrates and the lipid environment to test Msp1 activity.
- Analysis of substrate recognition and extraction kinetics.
Main Results:
- Msp1 recognizes substrates based on a hydrophobic mismatch between the substrate's transmembrane domain (TMD) and the surrounding lipid bilayer.
- The rate-limiting step in Msp1's function is the extraction of the substrate's TMD from the lipid bilayer.
- The developed assay maintains physiological substrate selectivity.
Conclusions:
- The lipid bilayer composition significantly influences AAA+ ATPase-mediated membrane protein extraction.
- Hydrophobic mismatch is a key recognition mechanism for Msp1.
- This study provides fundamental insights into Msp1 function and AAA+ ATPase mechanisms in membrane protein quality control.
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