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Updated: Sep 10, 2025

Isolation of Culturable Yeasts and Molds from Soils to Investigate Fungal Population Structure
Published on: May 27, 2022
Global patterns of diversity and distribution in Aspergillus fungi are driven by human and environmental influences
Olivia L Riedling1, Kyle T David1, Antonis Rokas1
1Department of Biological Sciences, Vanderbilt University, VU station B, Box #35-1634, Nashville, TN 37235, USA; Evolutionary Studies Initiative, Vanderbilt University, VU Box #34-1634, Nashville, TN 37235, USA.
Abstract:
Aspergillus fungi are key producers of pharmaceuticals, enzymes, and food products and exhibit diverse lifestyles, from saprophytes to opportunistic pathogens. The genus is divided into 28 taxonomic sections sharing traits (e.g., natural products) and lifestyles (e.g., xerophily, pathogenicity). Understanding global patterns of Aspergillus occurrence and diversity would deepen our ecological understanding and help monitor pathogens and producers of mycotoxins and diverse natural products. To identify key environmental factors influencing their geographic distributions and estimate the impact of future climate change, we trained a random forest machine learning classifier on 19,105 terrestrial occurrence records for 27 taxonomic sections and 96 environmental variables to predict distributions of each section. We found that regions with high section diversity are concentrated in temperate forests, suggesting that areas with mild seasonal variation serve as diversity hotspots. Section range estimates revealed extensive variability, and low range overlap suggests distinct niches. The top predictors of average section richness were the index of cumulative human impact, ecosystem productivity, and forested vs. non-forested ecoregions. Our future climate analyses revealed considerable variation in section range estimates in response to changing climates. Suitable habitats for some sections are predicted to expand (e.g., section Restricti) and others to contract (e.g., section Nigri) or remain stable (e.g., section Fumigati) in the next few decades. Our findings reveal that both natural and human factors influence the macroecology of Aspergillus fungi and highlight their ecological diversity, including the diversity of their responses to changing climates, which is of relevance to pathogen and mycotoxin risk assessment.
Insights
Aspergillus fungi diversity hotspots are in temperate forests, influenced by human impact and ecosystem productivity. Climate change will alter their habitats, with some expanding and others contracting.
Area of Science:
- Mycology and Ecology
- Environmental Science
- Computational Biology
Background:
- Aspergillus fungi are vital for pharmaceuticals, enzymes, and food, with diverse lifestyles including pathogens.
- Understanding Aspergillus distribution is crucial for ecological insights and monitoring mycotoxins and pathogens.
- The genus is taxonomically divided into 28 sections with shared traits and lifestyles.
Purpose of the Study:
- To identify environmental factors shaping Aspergillus geographic distributions.
- To predict the impact of future climate change on Aspergillus section ranges.
- To enhance ecological understanding and risk assessment for Aspergillus species.
Main Methods:
- A random forest machine learning classifier was trained on 19,105 terrestrial occurrence records.
- 96 environmental variables were used to predict distributions for 27 Aspergillus taxonomic sections.
- Macroecological patterns and climate change impacts were analyzed.
Main Results:
- Temperate forests identified as Aspergillus diversity hotspots, influenced by mild seasonal variation.
- Key predictors of Aspergillus richness include human impact, ecosystem productivity, and ecoregions.
- Significant variability in section range shifts under future climate change predicted.
Conclusions:
- Both natural and anthropogenic factors drive Aspergillus macroecology.
- Aspergillus sections exhibit diverse responses to climate change, impacting habitat suitability.
- Findings are relevant for pathogen and mycotoxin risk assessment and ecological management.
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