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Updated: Sep 10, 2025

Techniques to Induce and Quantify Cellular Senescence
Published on: May 1, 2017
KDM4 Orchestrates Epigenomic Remodeling of Senescent Cells and Potentiates the Senescence-Associated Secretory
Boyi Zhang1, Qilai Long2, Shanshan Wu1
1Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, China.
Abstract:
Cellular senescence restrains the expansion of neoplastic cells through several layers of regulation. We report that the histone H3-specific demethylase KDM4 is expressed as human stromal cells undergo senescence. In clinical oncology, upregulated KDM4 and diminished H3K9/H3K36 methylation correlate with poorer survival of patients with prostate cancer after chemotherapy. Global chromatin accessibility mapping via assay for transposase-accessible chromatin with high-throughput sequencing, and expression profiling through RNA sequencing, reveals global changes of chromatin openness and spatiotemporal reprogramming of the transcriptomic landscape, which underlie the senescence-associated secretory phenotype (SASP). Selective targeting of KDM4 dampens the SASP of senescent stromal cells, promotes cancer cell apoptosis in the treatment-damaged tumor microenvironment, and prolongs survival of experimental animals. Our study supports dynamic changes of H3K9/H3K36 methylation during senescence, identifies an unusually permissive chromatin state, and unmasks KDM4 as a key SASP modulator. KDM4 targeting presents a new therapeutic avenue to manipulate cellular senescence and limit its contribution to age-related pathologies, including cancer.
Insights
Cellular senescence, a cancer-restraining process, involves KDM4 expression and altered methylation. Targeting KDM4 dampens the senescence-associated secretory phenotype (SASP), aiding cancer therapy and improving survival.
Area of Science:
- Cellular and Molecular Biology
- Oncology
- Epigenetics
Background:
- Cellular senescence is a critical mechanism that prevents neoplastic cell proliferation.
- The role of specific epigenetic regulators, like KDM4, in senescence and cancer remains incompletely understood.
Purpose of the Study:
- To investigate the role of KDM4 in cellular senescence and its impact on the tumor microenvironment.
- To explore KDM4 targeting as a therapeutic strategy in prostate cancer.
Main Methods:
- Assay for transposase-accessible chromatin with high-throughput sequencing (ATAC-seq) for global chromatin accessibility.
- RNA sequencing for transcriptomic profiling.
- In vivo and in vitro models of senescence and cancer.
Main Results:
- KDM4 expression is upregulated during human stromal cell senescence.
- Decreased H3K9/H3K36 methylation and altered chromatin accessibility correlate with poor patient survival in prostate cancer.
- KDM4 inhibition reduces SASP, enhances cancer cell apoptosis, and improves survival in experimental models.
Conclusions:
- Dynamic epigenetic changes, including H3K9/H3K36 methylation shifts, characterize senescence.
- KDM4 is a key regulator of the senescence-associated secretory phenotype (SASP).
- Targeting KDM4 offers a novel therapeutic approach to modulate senescence in cancer treatment.
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