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Related Experiment Video

Updated: Sep 10, 2025

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Beyond model-specific biases: An explainable multifaceted approach for robust PM10 source apportionment.

Souichi Oka1, Takuma Yamazaki1, Yoshiyasu Takefuji2

  • 1Science Park Corporation, 3-24-9 Iriya-Nishi Zama-shi, Kanagawa, 252-0029, Japan.

Environmental Research
|August 24, 2025
PubMed
Summary

This study integrates machine learning models for PM10 source apportionment, with LPO-XGBoost showing high accuracy. However, model-specific biases in feature importance analysis raise concerns about reliability for environmental research.

Keywords:
Feature importanceMachine learningModel interpretabilityMultifaceted approachPM(10) source apportionment

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Area of Science:

  • Environmental Science
  • Data Science
  • Computational Chemistry

Background:

  • PM10 source apportionment is crucial for urban air quality management.
  • Integrating Positive Matrix Factorization with machine learning (ML) models like XGBoost, Random Forest (RF), and Support Vector Machine (SVM) offers a novel approach.
  • The Lung Performance Optimization (LPO) algorithm and 10-fold cross-validation were used to enhance model robustness.

Discussion:

  • LPO-XGBoost achieved the highest predictive accuracy (r² = 0.88).
  • SHAP values were used for feature importance interpretation, but model-specific biases (e.g., early feature selection in tree-based models, kernel transformations in SVM) raise concerns.
  • Variability in feature importance across models may indicate methodological inconsistencies rather than analytical depth, potentially undermining insights in noisy, high-dimensional environmental data.

Key Insights:

  • Machine learning models, particularly LPO-XGBoost, demonstrate strong predictive capabilities for PM10 source apportionment.
  • Model-dependent biases in SHAP value interpretations complicate the assessment of feature importance.
  • The reliability of source apportionment findings is challenged by inherent model biases and data complexities.

Outlook:

  • Future research should incorporate unsupervised learning and non-parametric methods (e.g., Feature Agglomeration, Highly Variable Gene Selection, Spearman's rho, Kendall's tau) for improved interpretability and robustness.
  • These alternative methods can better capture complex associations and reduce the influence of model-specific biases.
  • A more systematic evaluation approach is needed to strengthen reproducibility and support informed environmental decision-making.