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Updated: Sep 10, 2025

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Early-life gut microbiome development and its potential long-term impact on health outcomes
Alejandro Borrego-Ruiz1, Juan J Borrego2
1Department of Social and Organizational Psychology, National University of Distance Education (UNED), Madrid 28040, Spain.
Insights
Early infant gut microbiome (GM) development is crucial for long-term health. Dysbiosis, or imbalance, can lead to chronic diseases and mental health issues, highlighting the need for targeted interventions.
Area of Science:
- Microbiology and Immunology
- Developmental Biology
- Public Health
Background:
- The infant gut microbiome (GM) is established early in life and significantly impacts immune, intestinal, and metabolic development.
- Factors like birth mode, feeding, and antibiotic exposure influence GM composition.
- Gut microbiome dysbiosis in early life can disrupt normal development, leading to adverse long-term health outcomes.
Purpose of the Study:
- To review current knowledge on early-life GM development and its long-term health implications.
- To explore how early-life GM dysbiosis contributes to diseases like allergies, metabolic disorders, and inflammatory conditions.
- To examine the role of probiotics, prebiotics, and early-life stress (ELS) in shaping the infant GM and subsequent health.
Main Methods:
- This study is a narrative review synthesizing existing research.
- It analyzes findings on the impact of various early-life factors on GM composition and function.
- The review discusses the link between ELS, GM dysbiosis, and mental health outcomes.
Main Results:
- Early-life GM dysbiosis is associated with increased risk for allergic diseases, metabolic disorders, type 1 diabetes, IBD, and cardiovascular diseases.
- Probiotic and prebiotic supplementation may influence infant GM composition.
- ELS is linked to GM alterations, but a definitive microbiome signature for prenatal or postnatal stress requires further investigation.
Conclusions:
- The early-life microbiota has lasting effects on physiological health, with insufficient microbial exposure potentially triggering inflammatory responses.
- Targeting modifiable factors influencing the GM could improve gut health, particularly in vulnerable children.
- Further research is needed to establish causality and develop effective interventions for ELS-affected infants.
Abstract:
The initial gut colonization of the infant plays a pivotal role in shaping the immune system, developing the intestinal tract, and influencing host metabolism, all of which are strongly influenced by several determinants, such as gestational age at birth, mode of delivery, neonatal feeding practices, early-life stress (ELS), and exposure to perinatal antibiotics. However, resulting gut microbiome (GM) dysbiosis may alter this developmental programming, leading to long-term adverse health outcomes. This narrative review synthesizes current knowledge on early-life GM development and its long-term impact on health. Specifically, it addresses how early-life GM dysbiosis may affect the trajectory of physiological processes, predisposing individuals to conditions such as allergic diseases, metabolic disorders, type 1 diabetes, inflammatory bowel disorders, and atherosclerotic cardiovascular diseases. In addition, it examines the influence of probiotic and prebiotic supplementation during pregnancy and early life in shaping infant GM composition, as well as the impact of ELS-induced GM dysbiosis on mental health. Recent research suggests that the early-life microbiota initiates long-lasting effects, and inadequate or insufficient microbial exposure triggers inflammatory responses associated with several physiological conditions. Although several studies have reported a connection between ELS and the GM during both prenatal and postnatal periods, a unified microbiome signature linked to either prenatal or postnatal stress remains to be fully elucidated. Thus, future studies are needed to establish causality and determine whether modifiable factors affecting the GM could be targeted to improve gut health, especially in children exposed to contextual stress or adverse conditions.
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