Related Experiment Video
Updated: Sep 10, 2025

Expression, Purification, Crystallization, and Enzyme Assays of Fumarylacetoacetate Hydrolase Domain-Containing Proteins
Published on: June 20, 2019
Characterization of Fatty Acid Photodecarboxylase in Zeolitic Imidazolate Frameworks
Min-Shih Su1, Ya-Ting Kao1,2,3
1Department of Biological Science and Technology, College of Engineering Bioscience, National Yang Ming Chiao Tung University, Hsinchu 30068, Taiwan.
Abstract:
Fatty acid photodecarboxylase (FAP) was recently discovered in microalgae and is a photoenzyme that harvests sunlight to convert long-chain fatty acids to hydrocarbons. The hydrophobicity of the substrates and photoproducts strongly affects the stability of FAP in vitro studies. Here, we incorporated zeolitic imidazole frameworks (ZIFs) as structural protecting cages and characterized Chlorella variabilis FAP (cvFAP) in ZIFs. Due to the preparation conditions and the surface properties, ZIFs with a hydrophobic surface (ZIF-8) form a cluster-like packed morphology, and ZIFs with a hydrophilic surface (ZIF-90) form a hexagon-like morphology. However, both ZIFs compress FAP and lead to a more hydrophobic active-site environment and fewer active-site water molecules. The ZIF-90 cages enhance the cvFAP activity at higher temperature conditions. Upon irradiation, FAP undergoes energy deactivation and photoinactivation, and these processes compete with each other. In both ZIF cages, the deactivation processes of the excited FAP are slightly enhanced, resulting from the bent cofactor conformation. Although the ZIFs provide protective confinement to stabilize the enzyme structures when structural destruction originates from molecular fragmentation casing by photoinduced radical reactions, such protective effects are limited.
Related Concept Videos
Carboxylic Acids to Esters: Acid-Catalyzed (Fischer) Esterification Mechanism
Acid Halides to Carboxylic Acids: Hydrolysis
As shown below, the mechanism involves a nucleophilic attack by water at the carbonyl carbon to form a tetrahedral intermediate. This is followed by the reformation of the carbon–oxygen π bond along with the departure of a halide ion. A final proton transfer step yields carboxylic...
Carboxylic Acids to Methylesters: Alkylation using Diazomethane
IR and UV–Vis Spectroscopy of Carboxylic Acids
However, the stretching absorptions for the C=O bond vary depending on the structure of carboxylic acids. The C=O bond of the free carboxylic acids shows a higher stretching frequency, 1760 cm−1, while H-bonded carboxylic acids (dimers) exhibit stretching absorptions at a lower frequency,...
Structures of Carboxylic Acid Derivatives
Carboxylic acid derivatives contain an acyl group attached to a heteroatom such as chlorine, oxygen, or nitrogen. The carbonyl carbon and oxygen are both sp2-hybridized with an unhybridized p orbital.
The three sp2 orbitals of the carbonyl carbon form three σ bonds, one each with the carbonyl oxygen, the α carbon, and the heteroatom, whereas the other two sp2 orbitals of the carbonyl oxygen are occupied by the lone pairs. Further, the...
Carboxylic Acids to Esters: Acid-Catalyzed (Fischer) Esterification Overview

