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Updated: Sep 10, 2025

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
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Synergizing a knowledge graph and large language model for relay catalysis pathway recommendation.

Fei Fu1, Qing-Qing Li1, Fangrong Wang2

  • 1State Key Laboratory of Physical Chemistry of Solid Surface, iChEM, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China.

National Science Review
|August 27, 2025
PubMed
Summary
This summary is machine-generated.

Researchers developed an automated system using knowledge graphs and large language models to discover new relay catalysis pathways. This AI-driven approach significantly speeds up the identification of efficient multistep catalytic reactions.

Keywords:
generative pre-trained transformerknowledge graphlarge language modelrelay catalysis

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Area of Science:

  • Catalysis
  • Chemical Engineering
  • Computational Chemistry

Background:

  • Relay catalysis enables efficient multistep transformations but designing pathways is labor-intensive.
  • Current methods rely heavily on expert literature analysis, limiting discovery speed and scope.

Purpose of the Study:

  • To develop an automated approach for recommending multistep relay catalysis pathways.
  • To accelerate the design and discovery of novel catalytic reaction sequences.

Main Methods:

  • Integration of a knowledge graph (KG) and large language models (LLMs) for pathway recommendation.
  • LLM-assisted data acquisition and organization to build a comprehensive catalysis knowledge graph (Cat-KG).
  • Scoring rules and LLM-driven text generation for pathway validation and presentation.

Main Results:

  • The method successfully recommended relay catalysis pathways for ethylene, ethanol, and 2,5-furandicarboxylate within minutes.
  • Identified pathways were consistent with reported ones, demonstrating effectiveness and potential for novel discoveries.
  • The system generated readable chemical equations and descriptions, integrating reliable catalysis knowledge.

Conclusions:

  • The combined KG and LLM strategy automates the discovery of relay catalysis pathways.
  • This approach significantly reduces the time and cost associated with designing complex catalytic reactions.
  • The strategy shows potential for extrapolating known and identifying novel relay catalysis pathways.