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Construction and Analysis of Immune Infiltration and Competing Endogenous RNA Network in Moyamoya Disease
Wenhao Liu1, Hanhui Fu1, Shiyuan Fang1
1Department of Neurology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100730, China.
Abstract:
Moyamoya disease (MMD) is a cerebrovascular condition characterized by progressive stenosis of intracranial arteries, leading to stroke. While MMD was long considered a genetic disorder, emerging evidence suggests autoimmune mechanisms may contribute to its pathogenesis. The role of non-coding RNAs (ncRNAs) in the pathogenesis of MMD is under heated discussion, and a competitive endogenous RNA (ceRNA) network involving MMD-related ncRNAs has not been constructed. In this study, we integrated multiple bioinformatic analyses on transcriptomic data from the middle cerebral arteries of MMD patients and controls. Our analysis revealed a significant enrichment of innate immune system pathways, including antigen processing and macrophage activation, in MMD tissue. We constructed a robust ceRNA network centered on the long non-coding RNA MALAT1, identifying 15 core mRNA targets. A classifier built from these MALAT1-related genes accurately distinguished MMD patients from controls, with an area under the curve of 0.869 in independent validation. Furthermore, immune deconvolution analysis showed a marked increase in microvascular endothelial cells and a decrease in CD4+ memory T cells and regulatory T cells in MMD arteries. The expression of the MALAT1 network genes strongly correlated with these shifts in cellular composition, positively with endothelial cells and negatively with T cells. Our findings uncover a MALAT1-driven ceRNA network that links immune dysregulation to vascular changes in MMD, highlighting MALAT1 as a potential biomarker and therapeutic target.
Insights
Moyamoya disease (MMD) involves narrowed brain arteries. This study reveals a MALAT1-driven network linking immune system dysfunction to vascular changes in MMD, suggesting MALAT1 as a potential biomarker.
Area of Science:
- Neuroscience
- Immunology
- Genetics
Background:
- Moyamoya disease (MMD) is a cerebrovascular disorder causing stroke via progressive intracranial artery stenosis.
- While MMD was historically viewed as genetic, autoimmune factors are increasingly implicated.
- The role of non-coding RNAs (ncRNAs) and their networks in MMD pathogenesis is not well understood.
Purpose of the Study:
- To construct a competitive endogenous RNA (ceRNA) network involving MMD-related ncRNAs.
- To investigate the link between immune dysregulation and vascular changes in MMD.
- To identify potential biomarkers and therapeutic targets for MMD.
Main Methods:
- Bioinformatic analysis of transcriptomic data from MMD and control middle cerebral arteries.
- Construction and validation of a ceRNA network centered on the long non-coding RNA MALAT1.
- Immune deconvolution analysis to assess cellular composition changes in MMD arteries.
Main Results:
- Enrichment of innate immune pathways (antigen processing, macrophage activation) in MMD tissue.
- A MALAT1-centered ceRNA network with 15 core mRNA targets was identified.
- A classifier based on MALAT1-related genes achieved 0.869 AUC for MMD patient discrimination.
- MMD arteries showed increased microvascular endothelial cells and decreased T cells (CD4+ memory, regulatory).
- MALAT1 network gene expression correlated with altered immune cell populations.
Conclusions:
- A MALAT1-driven ceRNA network connects immune dysregulation to vascular pathology in MMD.
- This network highlights the role of ncRNAs in MMD pathogenesis.
- MALAT1 emerges as a potential diagnostic biomarker and therapeutic target for MMD.
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